PDBsum entry 1vzu Go to PDB code:  Tunnel analysis for: 1vzu calculated with MOLE 2.0 PDB id 1vzu Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.24 27.8 0.25 0.24 14.6 85 5 2 0 7 1 0 1  UDP 2371 B 2 1.19 1.26 29.7 -0.15 0.09 9.1 80 6 2 4 6 5 1 1  UDP 2371 B 3 1.24 1.25 32.6 -0.06 0.22 17.6 83 5 3 1 8 2 0 1  UDP 2371 B 4 1.16 1.26 34.6 -0.37 0.11 12.0 77 5 3 4 7 6 1 1  UDP 2371 B 5 1.17 1.25 36.4 -1.44 -0.01 18.1 76 3 3 2 5 7 0 1  UDP 2371 B GAL 2 D 6 1.17 1.26 41.2 -1.54 0.08 19.7 74 3 4 3 6 8 0 1  UDP 2371 B GAL 2 D 7 1.44 1.72 16.4 -0.38 -0.16 15.2 79 3 3 1 2 0 1 0   8 1.37 1.54 23.1 0.19 -0.08 5.3 86 3 0 1 5 0 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.