PDBsum entry 1vym Go to PDB code:  Tunnel analysis for: 1vym calculated with MOLE 2.0 PDB id 1vym Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.51 1.64 15.0 -1.21 -0.61 14.6 77 0 3 3 1 0 0 1   2 1.36 1.35 16.3 -2.01 -0.85 16.6 80 0 3 3 0 0 0 1   3 1.12 1.27 16.0 0.03 -0.46 8.1 87 1 1 1 3 0 0 0   4 1.26 1.40 19.7 -0.53 -0.58 14.2 82 1 5 0 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.