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PDBsum entry 1vw3
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Tunnel analysis for: 1vw3 calculated with  MOLE 2.0
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PDB id
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1vw3
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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19 tunnels,
coloured by tunnel radius |
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21 tunnels,
coloured by
tunnel radius
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21 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.32 |
1.34 |
64.0 |
-0.73 |
-0.35 |
11.1 |
89 |
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2 |
0 |
2 |
4 |
1 |
0 |
0 |
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G 671 A A 673 A C 1698 A G 1699 A C 1700 A A 1701
A C 1702 A A 1710 A A 1711 A U 1722 A A 1729 A A
1730 A G 1731 A G 1732 A U 1733 A G 1734 A U 1735
A MG 3366 A
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2 |
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1.30 |
1.54 |
64.7 |
-0.42 |
-0.45 |
5.0 |
77 |
1 |
0 |
0 |
2 |
1 |
0 |
0 |
G 229 A A 230 A U 324 A G 325 A U 667 A A 668 A G
669 A U 670 A G 671 A A 1710 A A 1711 A C 1713 A
G 1714 A A 1715 A U 1716 A U 1722 A G 1731 A G
1732 A G 1980 A U 1981 A A 1982 A U 2266 A A 2267
A
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3 |
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1.34 |
1.42 |
74.4 |
-0.36 |
-0.36 |
4.3 |
72 |
2 |
0 |
2 |
4 |
2 |
0 |
0 |
U 667 A A 668 A G 669 A U 670 A G 671 A A 1710 A
A 1711 A A 1712 A C 1713 A G 1714 A U 1722 A G
1731 A G 1732 A C 1747 A A 1748 A U 1749 A G 1750
A C 1751 A A 1804 A G 1805 A U 1976 A A 1982 A A
1983 A U 2262 A U 2263 A G 2264 A G 2265 A U 2266
A U 2863 A
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4 |
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1.35 |
1.56 |
79.6 |
-0.76 |
-0.44 |
6.3 |
75 |
3 |
0 |
2 |
2 |
2 |
0 |
0 |
U 667 A A 668 A G 669 A U 670 A G 671 A A 1710 A
A 1711 A A 1712 A C 1713 A G 1714 A U 1722 A G
1731 A G 1732 A C 1751 A U 1753 A A 1754 A A 1755
A A 1791 A A 1792 A A 1982 A A 1983 A U 1984 A U
1985 A A 1986 A A 2087 A A 2088 A U 2262 A U 2263
A G 2265 A U 2266 A
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5 |
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1.33 |
1.42 |
85.4 |
-0.40 |
-0.57 |
4.3 |
77 |
1 |
0 |
0 |
2 |
1 |
0 |
0 |
A 155 A A 156 A A 157 A A 589 A A 590 A A 591 A C
592 A G 593 A U 595 A G 662 A U 663 A U 664 A A
665 A G 666 A U 667 A A 668 A G 669 A U 670 A G
671 A G 1341 A U 1342 A U 1369 A A 1370 A A 1388
A A 1390 A A 1710 A A 1711 A C 1713 A G 1714 A A
1715 A U 1722 A G 1731 A G 1732 A A 1982 A U 2266
A MG 3324 A MG 3360 A
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6 |
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1.31 |
1.54 |
86.1 |
-0.42 |
-0.50 |
4.7 |
77 |
1 |
0 |
0 |
2 |
1 |
0 |
0 |
U 667 A A 668 A G 669 A U 670 A G 671 A U 1374 A
A 1382 A A 1392 A U 1393 A A 1708 A G 1709 A A
1710 A A 1711 A A 1712 A C 1713 A G 1714 A A 1718
A G 1719 A U 1720 A U 1722 A G 1731 A G 1732 A A
1982 A A 1983 A U 1984 A U 2098 A A 2099 A U 2100
A G 2265 A U 2266 A
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7 |
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1.34 |
1.41 |
88.4 |
-0.42 |
-0.46 |
5.0 |
77 |
1 |
0 |
0 |
2 |
1 |
0 |
0 |
U 667 A A 668 A G 669 A U 670 A G 671 A A 1710 A
A 1711 A U 1722 A G 1731 A G 1732 A C 1964 A C
1965 A U 1966 A G 1969 A C 1970 A A 1971 A G 1972
A C 1973 A U 1974 A G 2264 A U 2266 A A 2267 A G
2268 A U 2269 A U 2270 A U 2271 A U 2272 A G 2273
A U 2275 A G 2276 A U 2703 A U 2704 A A 2869 A MG
3329 A
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8 |
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1.32 |
1.54 |
89.5 |
-0.42 |
-0.50 |
5.4 |
79 |
2 |
0 |
0 |
3 |
1 |
0 |
0 |
U 664 A A 665 A G 666 A U 667 A A 668 A G 669 A U
670 A G 671 A A 1366 A A 1367 A U 1368 A U 1369 A
A 1370 A A 1388 A A 1390 A U 1391 A A 1392 A U
1393 A U 1394 A U 1395 A A 1536 A A 1710 A A 1711
A C 1713 A G 1714 A A 1715 A U 1722 A G 1731 A G
1732 A A 1982 A U 2266 A
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9 |
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1.32 |
1.54 |
95.3 |
-0.40 |
-0.54 |
4.5 |
77 |
1 |
0 |
0 |
2 |
1 |
0 |
0 |
U 148 A A 149 A A 156 A A 157 A A 396 A A 397 A A
589 A A 590 A A 591 A C 592 A G 593 A U 664 A A
665 A G 666 A U 667 A A 668 A G 669 A U 670 A G
671 A U 1342 A A 1370 A A 1371 A A 1388 A A 1390
A A 1710 A A 1711 A C 1713 A G 1714 A A 1715 A U
1722 A G 1731 A G 1732 A A 1982 A U 2266 A MG
3324 A MG 3360 A
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10 |
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2.39 |
2.39 |
16.0 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 2207 A A 2208 A U 2209 A U 2234 A A 2235 A U
2236 A A 2237 A
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11 |
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2.50 |
2.50 |
16.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 2206 A A 2207 A A 2208 A U 2209 A A 2235 A U
2236 A A 2237 A
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12 |
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2.59 |
2.59 |
19.7 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 2204 A G 2205 A U 2206 A A 2207 A A 2208 A U
2209 A U 2238 A A 2239 A U 2240 A
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13 |
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2.51 |
2.51 |
20.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 2207 A A 2208 A U 2209 A A 2210 A U 2211 A A
2232 A U 2233 A U 2234 A U 2236 A A 2237 A
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14 |
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2.29 |
2.29 |
15.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 2382 A A 2383 A A 2384 A U 2385 A U 2414 A A
2415 A U 2416 A
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15 |
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2.30 |
2.30 |
16.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 2384 A U 2385 A A 2412 A A 2413 A U 2414 A A
2415 A U 2416 A
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16 |
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2.30 |
2.30 |
17.9 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 2379 A U 2380 A G 2381 A A 2383 A A 2384 A U
2385 A U 2414 A A 2415 A U 2416 A A 2417 A U 2418
A
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17 |
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2.56 |
2.56 |
17.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 748 A A 749 A U 750 A A 751 A U 768 A U 769 A A
770 A U 771 A
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18 |
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1.65 |
1.65 |
16.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 2350 A A 2351 A A 2352 A U 2364 A A 2365 A U
2366 A
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19 |
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1.89 |
1.89 |
15.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 1065 A A 1066 A U 1067 A C 1068 A U 1082 A U
1083 A
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20 |
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1.31 |
1.47 |
15.0 |
0.43 |
0.06 |
9.4 |
70 |
1 |
1 |
1 |
3 |
2 |
1 |
0 |
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21 |
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1.54 |
1.54 |
16.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 10 A G 11 A A 12 A U 3283 A U 3284 A A 3285 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program