PDBsum entry 1vrj Go to PDB code:  Pore analysis for: 1vrj calculated with MOLE 2.0 PDB id 1vrj Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.03 2.36 40.0 -1.37 -0.37 18.9 82 2 2 1 4 2 2 0   2 2.04 2.37 44.3 -1.80 -0.43 21.5 82 2 3 2 3 2 2 0   3 1.90 2.12 56.8 -2.88 -0.71 28.5 86 7 5 8 2 0 0 0   4 2.26 3.46 64.0 -1.06 -0.11 27.5 79 7 8 1 6 2 0 0   5 1.41 2.89 111.3 -0.71 0.09 26.1 80 15 13 1 12 3 0 0   6 1.53 3.56 113.5 -0.76 0.08 26.6 79 16 14 1 13 3 0 0   7 2.17 4.32 155.3 -1.12 -0.11 11.4 79 9 2 14 6 10 5 0   8 1.39 2.09 160.5 -1.33 -0.28 22.1 82 14 16 13 22 5 0 0   9 1.46 2.92 186.4 -1.47 -0.32 22.8 82 14 19 14 23 6 2 0   10 1.29 1.44 190.7 -1.54 -0.38 18.3 80 13 14 16 15 7 4 0   11 1.87 2.96 217.6 -1.93 -0.42 21.9 80 14 12 17 9 7 6 0   12 1.47 3.24 233.6 -1.61 -0.27 18.1 80 15 10 16 13 11 7 0   13 1.46 1.78 240.7 -1.90 -0.39 20.7 84 21 14 24 13 7 3 0   14 1.45 3.31 248.9 -1.63 -0.29 22.9 79 20 19 12 17 6 6 0   15 1.31 2.81 262.3 -1.66 -0.28 23.0 80 22 19 14 18 7 6 0   16 1.22 2.54 273.2 -1.20 -0.24 18.0 80 19 23 25 27 14 4 0   17 1.66 1.68 331.9 -1.82 -0.37 22.7 81 30 25 24 19 9 5 0   18 1.43 2.70 351.1 -1.69 -0.33 19.4 81 25 19 27 18 14 9 0   19 1.30 2.19 370.6 -2.14 -0.48 20.7 83 30 18 37 16 13 8 0   20 1.64 2.23 378.2 -1.76 -0.36 22.2 82 30 23 28 22 10 5 0   21 1.32 3.59 385.9 -1.70 -0.39 22.8 82 26 33 26 34 11 8 0   22 1.30 2.07 407.5 -2.33 -0.55 22.9 85 37 24 46 16 10 5 0   23 1.45 1.83 412.5 -1.15 -0.11 19.0 80 28 27 23 29 13 7 0   24 1.89 3.42 426.0 -1.18 -0.13 22.1 80 33 35 20 32 8 6 0   25 2.13 3.53 440.5 -1.07 -0.11 17.6 79 22 22 26 27 15 10 0   26 1.67 3.05 450.0 -1.11 -0.11 21.2 81 32 35 20 34 9 6 0   27 1.43 1.70 468.9 -1.81 -0.42 22.5 82 37 38 38 36 14 7 0   28 1.46 3.62 594.7 -1.65 -0.33 20.3 82 42 33 47 32 15 12 0   29 1.73 2.09 709.8 -1.21 -0.17 16.8 80 36 32 50 42 24 17 0   30 1.76 2.11 719.3 -1.23 -0.17 19.1 81 46 45 44 49 18 13 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.