PDBsum entry 1vrj Go to PDB code:  Tunnel analysis for: 1vrj calculated with MOLE 2.0 PDB id 1vrj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 1.22 26.7 -0.63 -0.50 5.2 81 1 1 3 4 1 4 0   2 1.21 1.22 26.7 -0.63 -0.50 5.2 81 1 1 3 4 1 4 0   3 1.24 1.24 26.9 -0.91 -0.43 8.9 87 3 0 5 4 2 0 0   4 1.24 1.24 32.6 -1.58 -0.53 13.6 86 4 1 6 4 2 0 0   5 1.24 1.24 32.8 -1.48 -0.52 13.0 86 4 1 6 4 2 0 0   6 1.24 1.24 35.3 -0.84 -0.49 7.8 79 2 2 3 4 1 5 0   7 1.27 1.27 49.9 -1.50 -0.51 14.9 87 6 3 7 5 2 0 0   8 1.27 1.27 49.9 -1.50 -0.51 14.9 87 6 3 7 5 2 0 0   9 1.25 1.42 17.4 -0.07 -0.09 3.1 81 1 0 2 2 1 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.