PDBsum entry 1vqy Go to PDB code:  Pore analysis for: 1vqy calculated with MOLE 2.0 PDB id 1vqy Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   15 pores, coloured by radius 24 pores, coloured by radius 24 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.18 26.8 -1.62 -0.72 18.0 89 4 4 4 4 0 0 0  MSE 15 D 2 1.34 1.34 26.8 -0.93 -0.63 7.2 93 2 1 5 2 0 1 0  MSE 15 B 3 2.10 2.69 27.4 -0.20 -0.06 9.8 82 1 1 3 7 1 1 0   4 1.18 1.18 28.2 -1.25 -0.60 14.7 88 4 3 5 3 1 0 0  MSE 15 D 5 1.28 1.28 28.7 -1.31 -0.66 14.8 92 4 2 4 6 0 0 0  MSE 15 G 6 1.28 1.28 28.8 -1.41 -0.72 16.5 89 3 3 4 1 0 1 0  MSE 15 C 7 1.34 1.34 30.2 -0.92 -0.57 9.0 87 2 2 5 3 1 1 0   8 1.30 1.30 31.1 -1.58 -0.69 19.6 89 5 4 4 4 0 0 0   9 1.29 1.31 32.5 -2.05 -0.74 24.7 89 6 4 4 4 0 0 0  MSE 15 E 10 1.30 1.32 32.6 -1.97 -0.79 22.8 90 4 3 4 2 0 1 0  MSE 15 E 11 1.73 1.84 45.2 -0.90 -0.05 19.5 77 4 2 2 5 0 2 0  MSE 1 B 12 2.02 3.29 46.4 -3.44 -0.88 43.9 84 11 14 4 0 0 0 0   13 1.39 1.39 56.2 -2.36 -0.83 28.0 88 5 9 7 2 0 2 0  MSE 15 E 14 1.34 1.42 56.9 -2.74 -0.82 34.0 88 6 10 8 1 0 2 0  MSE 15 C 15 1.36 1.36 61.9 -2.50 -0.78 30.2 87 10 12 7 5 0 1 0  MSE 15 G 16 1.39 1.38 64.2 -2.34 -0.73 29.2 88 10 11 10 3 1 1 0  MSE 15 D 17 1.33 1.33 69.8 -1.19 -0.60 12.4 91 6 3 11 8 1 2 0  MSE 15 D MSE 15 G 18 1.40 1.40 72.0 -1.58 -0.72 17.4 91 6 7 11 8 0 2 0  MSE 15 D MSE 15 E 19 1.37 1.38 75.6 -1.79 -0.73 19.9 90 5 8 12 6 0 3 0  MSE 15 C MSE 15 G 20 1.35 1.42 77.0 -1.73 -0.71 21.0 91 7 8 12 8 0 2 0  MSE 15 C MSE 15 D 21 1.38 1.42 77.4 -1.61 -0.69 18.6 90 5 6 14 4 1 3 0  MSE 15 C MSE 15 D 22 1.35 1.36 77.4 -1.65 -0.75 18.0 90 4 8 11 7 0 3 0  MSE 15 E MSE 15 G 23 1.40 1.40 78.2 -1.30 -0.66 14.3 90 4 5 13 5 1 3 0  MSE 15 D MSE 15 E 24 1.33 1.35 79.9 -1.76 -0.71 20.4 90 7 8 12 6 0 3 0  MSE 15 G Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.