PDBsum entry 1vqy Go to PDB code:  Tunnel analysis for: 1vqy calculated with MOLE 2.0 PDB id 1vqy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 tunnels, coloured by tunnel radius 14 tunnels, coloured by tunnel radius 14 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.16 42.2 -2.87 -0.76 37.0 82 5 9 2 1 0 2 0   2 1.16 1.16 47.3 -2.91 -0.79 37.7 81 8 11 2 1 0 2 0   3 1.15 1.15 50.0 -1.51 -0.60 17.4 88 4 4 5 5 0 2 0  MSE 15 B 4 1.16 1.16 52.9 -1.53 -0.65 16.2 88 2 3 5 2 0 3 0  MSE 15 F 5 1.15 1.15 59.8 -2.11 -0.77 25.0 86 4 7 6 2 0 4 0  MSE 15 H 6 1.18 1.18 61.6 -2.08 -0.72 25.4 86 3 7 7 2 0 4 0  MSE 15 C 7 1.17 1.17 63.6 -1.97 -0.78 24.5 85 2 8 6 3 0 4 0  MSE 15 E 8 1.15 1.15 65.4 -1.75 -0.63 21.9 84 4 7 7 4 1 4 0  MSE 15 D 9 1.15 1.15 66.7 -1.68 -0.64 18.0 87 7 4 8 4 1 3 0   10 1.15 1.15 69.2 -1.60 -0.62 18.8 88 8 6 7 5 0 3 0   11 1.21 1.21 17.1 2.69 0.88 1.0 65 0 0 0 6 3 0 0  MSE 54 C MSE 54 D 12 1.25 1.25 17.9 2.73 0.92 1.0 65 0 0 0 6 3 0 0  MSE 54 C MSE 54 D 13 1.28 3.02 17.5 3.05 1.06 0.8 71 0 0 0 6 2 0 0  MSE 54 G MSE 54 H 14 1.14 2.61 19.8 2.91 0.99 0.8 65 0 0 0 6 3 0 0  MSE 54 E MSE 54 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.