PDBsum entry 1vqp Go to PDB code:  Tunnel analysis for: 1vqp calculated with MOLE 2.0 PDB id 1vqp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.37 214.0 -0.64 -0.74 4.7 84 4 0 4 2 0 2 0  U 825 0 G 833 0 C 849 0 U 850 0 C 851 0 G 1378 0 A 1379 0 U 1405 0 A 1406 0 A 1407 0 G 1409 0 U 1544 0 C 1545 0 G 1546 0 A 1547 0 U 1548 0 G 1568 0 U 1569 0 G 1619 0 C 1620 0 U 1635 0 G 1636 0 A 1637 0 C 1700 0 G 1703 0 G 1704 0 G 1706 0 A 1711 0 A 1712 0 G 1713 0 C 1714 0 A 1716 0 A 1717 0 A 1732 0 A 1733 0 C 1734 0 U 1749 0 C 1750 0 G 1751 0 C 1753 0 A 1754 0 G 1756 0 U 1757 0 U 1758 0 A 1759 0 U 1817 0 C 1818 0 G 1820 0 A 1997 0 A 2022 0 A 2024 0 G 2025 0 A 2089 0 G 2090 0 G 2091 0 U 2545 0 U 2546 0 G 2584 0 G 2585 0 U 2586 0 OMU 2587 0 OMG 2588 0 U 2589 0 U 2590 0 G 2592 0 G 2617 0 U 2640 0 C 2641 0 G 2642 0 G 2656 0 G 2657 0 A 2840 0 MG 8030 0 MG 8083 0 MG 8085 0 NA 9181 0 CL 9319 B MG 8069 K 2 1.12 1.37 214.2 -0.60 -0.73 4.6 84 4 0 3 2 0 2 0  U 825 0 G 833 0 C 849 0 U 850 0 C 851 0 G 1378 0 A 1379 0 U 1405 0 A 1406 0 A 1407 0 G 1409 0 U 1544 0 C 1545 0 G 1546 0 A 1547 0 U 1548 0 G 1568 0 U 1569 0 G 1619 0 C 1620 0 U 1635 0 G 1636 0 A 1637 0 C 1700 0 G 1703 0 G 1704 0 G 1706 0 A 1711 0 A 1712 0 G 1713 0 C 1714 0 A 1716 0 A 1717 0 A 1732 0 A 1733 0 C 1734 0 U 1749 0 C 1750 0 G 1751 0 C 1753 0 A 1754 0 G 1756 0 U 1757 0 U 1758 0 A 1759 0 U 1817 0 C 1818 0 G 1820 0 A 1997 0 A 2022 0 A 2024 0 G 2025 0 A 2089 0 G 2090 0 G 2091 0 U 2545 0 U 2546 0 G 2584 0 G 2585 0 U 2586 0 OMU 2587 0 OMG 2588 0 U 2589 0 U 2590 0 G 2592 0 G 2617 0 U 2640 0 C 2641 0 G 2642 0 G 2656 0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG 8030 0 MG 8083 0 MG 8085 0 NA 9181 0 CL 9319 B MG 8069 K 3 1.13 1.37 216.6 -1.28 -0.66 12.2 83 13 2 8 4 0 2 0  A 466 0 G 467 0 A 476 0 A 495 0 G 496 0 A 498 0 G 499 0 G 514 0 U 845 0 A 1390 0 G 1391 0 A 1427 0 C 1428 0 A 1434 0 A 1732 0 A 1733 0 C 1734 0 U 1749 0 C 1750 0 G 1751 0 A 1997 0 A 2089 0 G 2090 0 G 2091 0 G 2099 0 A 2100 0 A 2103 0 U 2541 0 U 2545 0 U 2546 0 G 2584 0 G 2585 0 U 2586 0 OMU 2587 0 OMG 2588 0 U 2589 0 U 2590 0 G 2592 0 G 2616 0 G 2617 0 G 2618 0 UR3 2619 0 U 2620 0 U 2640 0 C 2641 0 G 2643 0 C 2644 0 U 2645 0 G 2646 0 G 2656 0 G 2657 0 A 2840 0 MG 8030 0 MG 8059 0 NA 9181 0 CL 9319 B MG 8069 K 4 1.12 1.37 216.8 -1.25 -0.65 12.0 83 13 2 7 4 0 2 0  A 466 0 G 467 0 A 476 0 A 495 0 G 496 0 A 498 0 G 499 0 G 514 0 U 845 0 A 1390 0 G 1391 0 A 1427 0 C 1428 0 A 1434 0 A 1732 0 A 1733 0 C 1734 0 U 1749 0 C 1750 0 G 1751 0 A 1997 0 A 2089 0 G 2090 0 G 2091 0 G 2099 0 A 2100 0 A 2103 0 U 2541 0 U 2545 0 U 2546 0 G 2584 0 G 2585 0 U 2586 0 OMU 2587 0 OMG 2588 0 U 2589 0 U 2590 0 G 2592 0 G 2616 0 G 2617 0 G 2618 0 UR3 2619 0 U 2620 0 U 2640 0 C 2641 0 G 2643 0 C 2644 0 U 2645 0 G 2646 0 G 2656 0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG 8030 0 MG 8059 0 NA 9181 0 CL 9319 B MG 8069 K 5 1.18 1.31 26.8 0.87 -0.03 4.6 87 1 0 0 7 1 1 0  U 1164 0 G 1165 0 A 1166 0 G 1167 0 A 1174 0 6 1.15 1.42 35.0 0.82 -0.03 4.7 88 1 0 1 7 1 1 0  A 1166 0 G 1167 0 C 1168 0 U 1169 0 C 1179 0 U 1180 0 A 1181 0 7 1.32 2.00 16.3 -2.48 -0.62 28.0 87 4 1 1 0 0 0 0  C 2502 0 A 2503 0 A 2504 0 U 2512 0 8 1.59 1.75 16.8 -2.32 -0.64 25.7 88 3 0 1 0 0 0 0  C 2502 0 A 2503 0 A 2504 0 G 2505 0 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.