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PDBsum entry 1vqo
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Tunnel analysis for: 1vqo calculated with  MOLE 2.0
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PDB id
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1vqo
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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4 tunnels,
coloured by tunnel radius |
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14 tunnels,
coloured by
tunnel radius
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14 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.20 |
1.20 |
143.0 |
-0.91 |
-0.79 |
6.9 |
91 |
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7 |
0 |
4 |
0 |
0 |
0 |
0 |
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U 468 0 A 542 0 G 543 0 C 556 0 C 557 0 C 558 0 U
559 0 A 593 0 C 594 0 G 607 0 A 608 0 U 609 0 A
635 0 G 636 0 C 637 0 C 638 0 A 639 0 G 640 0 C
842 0 A 843 0 A 844 0 A 882 0 G 1093 0 U 1320 0 A
1321 0 G 1322 0 G 1323 0 G 1324 0 G 1325 0 U 1326
0 A 1331 0 C 1332 0 U 1333 0 A 1355 0 A 1356 0 A
1357 0 C 1360 0 C 1361 0 U 1362 0 G 1363 0 G 1364
0 C 1365 0 G 1688 0 A 1689 0 C 1692 0 A 1693 0 G
1694 0 C 2056 0 MG 8063 0 SR 9430 0
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2 |
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1.21 |
1.21 |
145.5 |
-0.53 |
-0.72 |
5.6 |
91 |
2 |
0 |
0 |
1 |
0 |
0 |
0 |
U 468 0 U 832 0 G 833 0 G 834 0 U 835 0 C 842 0 A
843 0 A 844 0 U 845 0 A 882 0 G 1688 0 A 1689 0 C
1692 0 A 1693 0 G 1694 0 G 1751 0 C 1753 0 A 1821
0 A 1822 0 G 1823 0 C 1824 0 U 1825 0 C 1826 0 C
1975 0 G 1976 0 G 2000 0 G 2001 0 C 2002 0 U 2016
0 U 2017 0 A 2018 0 A 2019 0 C 2021 0 A 2022 0 G
2023 0 A 2024 0 C 2026 0 G 2099 0 A 2100 0 A 2103
0 A 2538 0 G 2540 0 G 2616 0 G 2617 0 UR3 2619 0
U 2620 0 G 2643 0 C 2644 0 U 2645 0 SR 9530 0
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3 |
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1.23 |
1.24 |
165.5 |
-1.29 |
-0.74 |
13.9 |
88 |
9 |
2 |
3 |
1 |
0 |
0 |
0 |
A 466 0 G 467 0 U 468 0 A 476 0 C 842 0 A 843 0 A
844 0 A 882 0 G 1410 0 A 1411 0 U 1419 0 C 1420 0
C 1421 0 U 1422 0 C 1428 0 A 1437 0 G 1438 0 U
1440 0 G 1441 0 G 1497 0 U 1503 0 A 1504 0 U 1505
0 G 1546 0 A 1547 0 U 1548 0 C 1549 0 C 1551 0 G
1552 0 C 1553 0 C 1564 0 C 1565 0 C 1566 0 A 1567
0 G 1568 0 U 1569 0 C 1680 0 A 1685 0 G 1688 0 A
1689 0 C 1692 0 A 1693 0 G 1694 0 A 1717 0 C 1720
0 MG 8029 0 SR 9422 0
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4 |
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1.23 |
1.24 |
166.9 |
-1.22 |
-0.68 |
12.8 |
85 |
11 |
3 |
3 |
3 |
1 |
0 |
0 |
C 29 0 C 31 0 C 87 0 G 307 0 C 309 0 U 310 0 C
311 0 U 312 0 G 314 0 A 317 0 C 318 0 A 319 0 G
320 0 A 321 0 G 322 0 C 323 0 C 330 0 G 332 0 G
333 0 G 334 0 U 335 0 A 337 0 C 338 0 A 339 0 A
340 0 C 341 0 A 462 0 A 466 0 G 467 0 U 468 0 A
476 0 G 479 0 C 480 0 U 481 0 C 483 0 A 484 0 G
514 0 C 842 0 A 843 0 A 844 0 A 882 0 C 1342 0 A
1427 0 C 1428 0 G 1688 0 A 1689 0 C 1692 0 A 1693
0 G 1694 0
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5 |
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1.26 |
1.26 |
169.4 |
-0.45 |
-0.73 |
4.7 |
91 |
2 |
0 |
0 |
1 |
0 |
0 |
0 |
U 468 0 G 787 0 A 788 0 C 789 0 U 825 0 A 827 0 G
828 0 A 829 0 U 831 0 C 838 0 C 839 0 C 842 0 A
843 0 A 844 0 U 845 0 A 846 0 C 847 0 C 848 0 C
849 0 U 850 0 A 882 0 A 1406 0 A 1407 0 U 1408 0
G 1490 0 G 1491 0 A 1493 0 U 1531 0 G 1532 0 G
1535 0 C 1536 0 C 1537 0 C 1575 0 G 1576 0 U 1577
0 G 1614 0 A 1615 0 A 1616 0 C 1617 0 A 1642 0 C
1643 0 C 1644 0 A 1661 0 C 1662 0 G 1663 0 A 1682
0 G 1688 0 A 1689 0 C 1692 0 A 1693 0 G 1694 0 G
1695 0 U 1696 0 G 1697 0 U 1698 0 C 1699 0 C 1700
0 A 1701 0 G 1837 0 U 1838 0 G 2099 0 A 2100 0 C
2644 0 G 2646 0 SR 9445 0
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6 |
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1.14 |
1.14 |
182.0 |
-0.55 |
-0.72 |
5.1 |
93 |
3 |
0 |
1 |
1 |
0 |
0 |
0 |
U 468 0 U 825 0 G 828 0 U 831 0 C 838 0 C 839 0 C
842 0 A 843 0 A 844 0 U 845 0 A 846 0 C 847 0 C
848 0 C 849 0 U 850 0 A 882 0 G 1378 0 A 1379 0 U
1380 0 A 1381 0 C 1403 0 C 1404 0 A 1407 0 U 1561
0 C 1562 0 G 1688 0 A 1689 0 C 1692 0 A 1693 0 G
1694 0 A 1712 0 G 1713 0 C 1714 0 G 1837 0 U 1838
0 G 2099 0 A 2100 0 C 2644 0 G 2646 0 C 2728 0 C
2729 0 G 2730 0 G 2731 0 U 2732 0 U 2733 0 G 2740
0 A 2741 0 G 2742 0 A 2743 0 G 2744 0 C 2745 0 A
2746 0 C 2747 0 G 2748 0 U 2749 0 G 2750 0 G 2869
0 C 2870 0 G 2882 0 A 2883 0 G 2884 0 MG 8024 0
SR 9445 0 SR 9450 0
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7 |
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1.22 |
1.22 |
188.6 |
-1.12 |
-0.76 |
12.2 |
85 |
9 |
5 |
3 |
2 |
0 |
0 |
0 |
C 31 0 G 32 0 G 33 0 C 34 0 U 35 0 G 50 0 C 62 0
U 63 0 C 85 0 A 86 0 C 87 0 A 151 0 A 174 0 G 175
0 U 176 0 A 177 0 G 203 0 A 204 0 U 205 0 G 206 0
U 207 0 C 208 0 G 209 0 U 210 0 U 211 0 G 213 0 G
225 0 A 226 0 A 227 0 C 228 0 G 229 0 C 230 0 G
231 0 A 232 0 U 233 0 A 234 0 C 440 0 A 441 0 A
442 0 C 443 0 G 458 0 A 459 0 C 461 0 A 462 0 G
464 0 A 466 0 G 467 0 U 468 0 A 476 0 G 479 0 C
480 0 G 514 0 U 647 0 C 842 0 A 843 0 A 844 0 A
882 0 A 1427 0 C 1428 0 G 1688 0 A 1689 0 C 1692
0 A 1693 0 G 1694 0 MG 8015 0
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8 |
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1.14 |
1.14 |
195.3 |
-0.52 |
-0.70 |
5.8 |
91 |
2 |
2 |
2 |
2 |
1 |
0 |
0 |
U 468 0 C 842 0 A 843 0 A 844 0 U 845 0 A 882 0 U
1120 0 G 1121 0 C 1129 0 U 1130 0 G 1131 0 A 1132
0 A 1133 0 G 1135 0 U 1136 0 G 1221 0 A 1222 0 G
1223 0 G 1224 0 C 1225 0 G 1226 0 C 1227 0 C 1228
0 A 1230 0 A 1232 0 U 1237 0 C 1238 0 G 1688 0 A
1689 0 C 1692 0 A 1693 0 G 1694 0 G 2068 0 G 2099
0 A 2100 0 A 2103 0 C 2104 0 A 2474 0 A 2486 0 C
2487 0 A 2488 0 G 2489 0 A 2490 0 G 2491 0 U 2492
0 G 2524 0 G 2525 0 U 2527 0 U 2528 0 G 2529 0 C
2530 0 A 2538 0 U 2620 0 PSU 2621 0 A 2637 0 C
2644 0 MG 8025 0 NA 9171 0 DC 75 4 PPU 76 4 C
3091 9
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9 |
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1.16 |
1.17 |
214.2 |
-1.25 |
-0.79 |
14.4 |
83 |
9 |
10 |
3 |
2 |
0 |
0 |
0 |
C 31 0 G 32 0 G 33 0 C 34 0 U 35 0 G 50 0 C 62 0
U 63 0 C 85 0 A 86 0 C 87 0 A 151 0 A 174 0 U 176
0 A 177 0 G 213 0 U 214 0 G 223 0 U 224 0 G 225 0
C 440 0 A 441 0 A 442 0 C 443 0 G 458 0 A 459 0 C
461 0 A 462 0 G 464 0 A 466 0 G 467 0 U 468 0 A
476 0 G 479 0 C 480 0 G 514 0 U 647 0 G 648 0 U
649 0 C 650 0 U 651 0 G 661 0 U 662 0 G 681 0 A
682 0 G 683 0 G 684 0 C 685 0 A 686 0 C 687 0 G
689 0 G 690 0 G 691 0 C 757 0 A 758 0 C 759 0 C
842 0 A 843 0 A 844 0 A 882 0 A 1427 0 C 1428 0 G
1688 0 A 1689 0 C 1692 0 A 1693 0 G 1694 0 NA
9141 0
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10 |
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1.20 |
1.20 |
210.7 |
-0.60 |
-0.73 |
6.4 |
89 |
4 |
1 |
1 |
1 |
0 |
0 |
0 |
U 468 0 U 794 0 G 795 0 A 796 0 A 797 0 G 798 0 G
809 0 G 810 0 C 811 0 A 812 0 C 813 0 G 814 0 U
825 0 G 828 0 U 831 0 C 838 0 C 839 0 C 842 0 A
843 0 A 844 0 U 845 0 A 846 0 C 847 0 C 848 0 C
849 0 U 850 0 A 882 0 G 1378 0 A 1379 0 A 1407 0
G 1688 0 A 1689 0 C 1692 0 A 1693 0 G 1694 0 A
1712 0 G 1713 0 G 1739 0 U 1740 0 G 1756 0 U 1757
0 U 1758 0 A 1759 0 C 1762 0 C 1763 0 C 1764 0 G
1765 0 U 1766 0 G 1773 0 G 1774 0 G 1777 0 A 1778
0 G 1780 0 G 1781 0 G 1782 0 A 1783 0 U 1784 0 A
1811 0 G 1812 0 A 1815 0 C 1816 0 U 1817 0 G 1819
0 G 1837 0 U 1838 0 G 2099 0 A 2100 0 C 2644 0 G
2646 0 C 2752 0 SR 9445 0 SR 9477 0 SR 9484 0
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11 |
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1.21 |
1.20 |
228.5 |
-1.40 |
-0.72 |
16.4 |
84 |
16 |
12 |
4 |
4 |
0 |
1 |
0 |
C 31 0 G 32 0 G 33 0 C 34 0 U 35 0 C 36 0 A 37 0
G 50 0 C 62 0 U 63 0 C 85 0 A 86 0 C 87 0 A 151 0
G 209 0 C 440 0 A 441 0 A 442 0 C 443 0 G 458 0 A
459 0 C 461 0 A 462 0 G 464 0 A 466 0 G 467 0 U
468 0 A 476 0 G 479 0 C 480 0 G 514 0 G 648 0 U
649 0 C 650 0 U 651 0 G 652 0 C 653 0 U 655 0 G
656 0 G 657 0 C 658 0 A 659 0 A 665 0 A 666 0 G
747 0 C 748 0 C 749 0 A 750 0 U 751 0 C 842 0 A
843 0 A 844 0 A 882 0 A 1427 0 C 1428 0 G 1688 0
A 1689 0 C 1692 0 A 1693 0 G 1694 0 NA 9104 C CD
9205 O
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12 |
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1.53 |
1.67 |
19.9 |
-1.91 |
-0.57 |
22.4 |
88 |
3 |
1 |
1 |
0 |
0 |
1 |
0 |
G 964 0 A 965 0 U 966 0 C 1004 0
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13 |
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1.55 |
1.55 |
20.7 |
-1.66 |
-0.63 |
19.7 |
88 |
2 |
1 |
1 |
0 |
0 |
1 |
0 |
G 964 0 A 965 0 U 966 0 C 1004 0
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14 |
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1.14 |
1.14 |
17.5 |
-0.64 |
-0.82 |
6.7 |
92 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
A 485 0 A 486 0 G 487 0 U 488 0 A 489 0 C 490 0 G
504 0 C 505 0 G 512 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program