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PDBsum entry 1vql
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Tunnel analysis for: 1vql calculated with  MOLE 2.0
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PDB id
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1vql
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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4 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.21 |
1.68 |
257.4 |
-0.91 |
-0.54 |
11.7 |
86 |
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15 |
4 |
8 |
12 |
0 |
1 |
0 |
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C 31 0 C 87 0 U 335 0 G 336 0 C 461 0 A 462 0 A
466 0 G 467 0 A 476 0 G 479 0 C 480 0 U 481 0 G
482 0 A 484 0 G 514 0 U 845 0 A 1427 0 C 1428 0 A
1732 0 A 1733 0 C 1734 0 U 1749 0 C 1750 0 G 1751
0 A 1997 0 A 2089 0 G 2090 0 G 2091 0 G 2099 0 A
2100 0 A 2103 0 G 2540 0 U 2545 0 U 2546 0 G 2584
0 G 2585 0 U 2586 0 OMU 2587 0 OMG 2588 0 U 2589
0 U 2590 0 G 2592 0 G 2616 0 G 2617 0 G 2618 0
UR3 2619 0 U 2620 0 U 2640 0 C 2641 0 G 2643 0 C
2644 0 U 2645 0 G 2646 0 G 2656 0 G 2657 0 C 2839
0 A 2840 0 A 2841 0 G 2842 0 MG 8030 0 NA 9181 0
SR 9530 0 CL 9319 B MG 8069 K
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2 |
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1.35 |
1.42 |
269.3 |
-1.14 |
-0.67 |
11.0 |
86 |
13 |
1 |
7 |
5 |
0 |
1 |
0 |
C 31 0 C 62 0 U 63 0 G 64 0 C 65 0 G 71 0 C 72 0
C 73 0 A 74 0 U 75 0 G 76 0 C 85 0 A 86 0 C 87 0
G 97 0 A 98 0 A 99 0 C 100 0 C 101 0 A 102 0 U
103 0 C 444 0 C 461 0 A 462 0 A 466 0 G 467 0 A
476 0 G 479 0 C 480 0 G 514 0 U 845 0 A 1427 0 C
1428 0 A 1732 0 A 1733 0 C 1734 0 U 1749 0 C 1750
0 G 1751 0 A 1997 0 A 2089 0 G 2090 0 G 2091 0 G
2099 0 A 2100 0 A 2103 0 G 2540 0 U 2545 0 U 2546
0 G 2584 0 G 2585 0 U 2586 0 OMU 2587 0 OMG 2588
0 U 2589 0 U 2590 0 G 2592 0 G 2616 0 G 2617 0 G
2618 0 UR3 2619 0 U 2620 0 U 2640 0 C 2641 0 G
2643 0 C 2644 0 U 2645 0 G 2646 0 G 2656 0 G 2657
0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG 8030 0
MG 8085 0 NA 9181 0 SR 9530 0 CL 9319 B MG 8069 K
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3 |
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1.61 |
1.83 |
16.7 |
-2.27 |
-0.65 |
25.1 |
88 |
3 |
0 |
1 |
0 |
0 |
0 |
0 |
C 2502 0 A 2503 0 A 2504 0 G 2505 0
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4 |
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1.20 |
1.20 |
18.3 |
-0.68 |
-0.66 |
2.9 |
87 |
0 |
0 |
1 |
0 |
0 |
1 |
0 |
A 1166 0 G 1167 0 C 1168 0 U 1169 0 C 1179 0 U
1180 0 A 1181 0 A 1192 0
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5 |
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1.15 |
1.15 |
15.8 |
-0.49 |
-0.84 |
3.0 |
117 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
A 1590 0 G 1592 0 C 1593 0 C 1594 0 A 1606 0 A
1607 0 G 1608 0
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6 |
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2.10 |
2.10 |
23.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 1902 0 U 1903 0 A 1904 0 U 1905 0 A 1934 0 C
1935 0 C 1936 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program