PDBsum entry 1vos

Pore analysis for: 1vos calculated with

MOLE 2.0

PDB id

1vos

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

30 pores, coloured by radius

30 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1.27

3.69

32.1

1.33

0.80

9.2

1.44

74.9

-0.40

-0.80

3.4

C 58 A G 61 A G 68 A A 70 A U 71 A C 73 A G 74 A
C 75 A G 78 A G 79 A G 88 A G 89 A C 91 A G 92 A
G 94 A A 101 A G 102 A A 152 A C 153 A A 162 A C
163 A U 164 A

1.65

85.3

-1.08

-0.71

10.9

G 785 A A 790 A G 791 A A 792 A U 793 A C 1403 A
C 1404 A G 1405 A U 1406 A C 1407 A A 1408 A G
1486 A G 1487 A G 1488 A G 1489 A G 1491 A A 1493
A G 1494 A U 1495 A C 1496 A G 1497 A U 1498 A G
1516 A G 1517 A

2.15

3.13

107.9

-1.26

-0.66

13.3

G 674 A A 675 A A 676 A U 677 A U 678 A C 679 A G
691 A A 706 A C 707 A C 708 A G 709 A G 710 A G
711 A G 713 A C 779 A A 780 A A 781 A C 784 A G
785 A A 792 A U 793 A A 794 A C 795 A C 796 A C
797 A G 798 A G 1523 A

1.32

109.2

-0.78

6.7

C 58 A G 61 A C 67 A G 68 A A 101 A G 102 A C 103
A G 104 A G 145 A G 146 A C 150 A A 151 A C 163 A
U 164 A A 171 A A 172 A G 199 A G 205 A C 207 A U
208 A U 209 A C 210 A G 211 A G 212 A G 213 A U
214 A

1.76

124.9

-1.40

-0.65

8.5

G 693 A G 785 A U 789 A G 791 A A 792 A U 793 A A
937 A A 938 A G 939 A C 940 A G 941 A G 1300 A C
1335 A C 1336 A G 1337 A A 1339 A A 1340 A U 1341
A G 1497 A U 1498 A A 1499 A G 1505 A G 1517 A A
1518 A A 1519 A

1.42

1.67

133.4

-0.76

-0.65

11.2

G 670 A G 671 A U 672 A G 673 A G 674 A A 675 A A
676 A U 677 A U 678 A C 679 A G 691 A A 706 A C
707 A C 708 A G 709 A G 710 A G 711 A A 712 A G
713 A C 779 A A 780 A A 781 A C 784 A G 785 A A
792 A U 793 A A 794 A C 795 A C 796 A C 797 A G
798 A G 1523 A

2.11

132.8

-1.19

-0.69

14.4

U 14 A G 15 A C 417 A C 418 A C 419 A U 420 A U
421 A C 422 A G 500 A U 512 A C 513 A C 514 A C
528 A A 532 A U 534 A G 538 A A 539 A G 540 A A
913 A A 914 A A 915 A U 1196 A G 1207 A A 1396 A
C 1397 A C 1402 A C 1403 A C 1404 A G 1405 A U
1406 A C 1407 A A 1408 A G 1486 A G 1487 A G 1488
A G 1489 A C 1490 A G 1491 A A 1493 A G 1494 A G
1516 A G 1517 A

1.50

3.63

135.3

-0.14

-0.25

10.3

G 671 A U 672 A G 673 A G 674 A A 675 A A 676 A U
677 A U 678 A C 679 A G 691 A A 706 A C 707 A C
708 A G 709 A G 710 A G 711 A A 712 A G 713 A C
736 A C 779 A A 780 A A 781 A C 784 A G 785 A A
792 A U 793 A A 794 A C 795 A C 796 A C 797 A G
798 A G 1523 A

1.73

135.2

-0.82

-0.74

7.2

A 51 A G 52 A A 53 A C 54 A A 55 A U 56 A G 57 A
C 58 A A 59 A G 61 A A 116 A G 286 A U 287 A G
331 A A 338 A C 339 A U 340 A A 349 A G 350 A G
351 A C 352 A A 908 A A 909 A U 1406 A C 1407 A A
1408 A C 1409 A G 1410 A C 1411 A C 1412 A A 1413
A G 1423 A C 1424 A C 1478 A C 1479 A G 1480 A U
1481 A G 1482 A A 1483 A C 1484 A U 1485 A G 1486
A G 1487 A G 1516 A G 1517 A

2.10

2.17

138.7

-1.13

-0.73

12.5

U 723 A G 724 A G 725 A C 726 A G 727 A A 729 A A
781 A C 784 A G 785 A A 792 A U 793 A A 794 A C
795 A C 796 A C 797 A G 798 A G 818 A G 823 A C
824 A G 825 A C 826 A U 827 A G 830 A U 831 A C
832 A U 833 A C 834 A U 835 A C 846 A C 847 A G
848 A U 850 A G 851 A G 852 A G 853 A G 854 A G
855 A U 870 A U 871 A U 1506 A A 1507 A G 1508 A
U 1522 A G 1523 A C 1527 A U 1528 A G 1530 A

1.36

1.37

138.5

-1.13

-0.67

12.9

U 14 A G 15 A U 420 A U 512 A C 513 A C 528 A A
532 A U 534 A A 913 A A 914 A A 915 A U 991 A U
992 A G 993 A G 1042 A C 1043 A A 1044 A C 1045 A
A 1046 A U 1196 A G 1206 A G 1207 A C 1208 A C
1210 A U 1211 A U 1212 A A 1396 A C 1397 A C 1402
A C 1403 A C 1404 A G 1405 A U 1406 A C 1407 A A
1408 A G 1486 A G 1487 A G 1488 A G 1489 A C 1490
A G 1491 A A 1493 A G 1494 A G 1516 A G 1517 A

2.33

143.8

-0.85

-0.58

11.2

G 693 A A 781 A C 784 A G 785 A A 792 A U 793 A A
794 A C 795 A C 796 A C 797 A G 798 A G 929 A C
930 A C 931 A C 932 A U 1085 A U 1086 A G 1087 A
G 1089 A U 1090 A U 1091 A G 1094 A C 1096 A C
1097 A A 1105 A G 1160 A C 1161 A A 1169 A G 1171
A U 1380 A U 1381 A G 1387 A A 1503 A U 1506 A A
1507 A U 1522 A G 1523 A C 1533 A A 1534 A

1.17

146.1

-0.99

-0.62

11.7

G 693 A A 781 A C 784 A G 785 A A 792 A U 793 A A
794 A C 795 A C 796 A C 797 A G 798 A G 929 A C
930 A C 931 A C 932 A G 1088 A G 1089 A U 1159 A
G 1160 A A 1167 A A 1168 A A 1169 A G 1171 A C
1172 A G 1173 A G 1174 A G 1182 A G 1379 A U 1380
A U 1381 A A 1503 A U 1506 A A 1507 A U 1522 A G
1523 A C 1533 A A 1534 A

1.56

1.70

159.1

-0.99

-0.54

14.7

G 662 A A 663 A G 664 A G 666 A G 667 A G 668 A U
669 A G 670 A G 671 A U 672 A G 673 A G 711 A A
712 A G 713 A G 714 A A 715 A A 716 A G 734 A C
735 A C 736 A A 737 A C 806 A U 833 A C 834 A U
835 A G 836 A G 837 A G 839 A C 846 A C 847 A

2.67

2.85

162.1

-1.16

-0.66

8.5

U 14 A A 913 A A 914 A A 915 A C 924 A A 937 A A
938 A G 939 A C 940 A G 941 A G 966 A C 1195 A U
1196 A G 1300 A C 1335 A C 1336 A G 1337 A A 1339
A A 1340 A U 1341 A C 1383 A C 1384 A G 1385 A A
1396 A C 1397 A A 1398 A C 1399 A C 1400 A G 1401
A C 1402 A C 1403 A C 1404 A G 1405 A U 1406 A C
1407 A A 1408 A G 1486 A G 1487 A G 1488 A G 1489
A C 1490 A G 1491 A A 1493 A G 1494 A G 1516 A G
1517 A

2.10

2.19

167.3

-0.71

-0.77

7.1

A 572 A A 573 A U 723 A G 724 A C 726 A G 727 A A
729 A G 818 A G 823 A C 824 A G 825 A C 826 A U
827 A G 830 A U 831 A C 832 A U 833 A C 834 A U
835 A C 846 A C 847 A G 848 A U 850 A G 851 A G
852 A G 853 A G 854 A G 855 A C 856 A C 866 A G
867 A U 870 A U 871 A G 887 A G 888 A A 915 A G
916 A G 917 A A 918 A A 919 A G 1392 A U 1393 A A
1394 A C 1403 A C 1404 A G 1405 A U 1406 A C 1407
A A 1408 A G 1486 A G 1487 A G 1488 A G 1489 A C
1490 A G 1491 A G 1494 A G 1516 A G 1517 A U 1528
A G 1529 A

2.10

171.6

-1.59

-0.67

18.1

C 417 A C 418 A C 419 A U 420 A U 421 A C 422 A G
500 A U 512 A C 513 A C 514 A C 528 A A 532 A U
534 A G 538 A A 539 A G 540 A G 785 A A 790 A G
791 A A 792 A U 793 A U 1196 A G 1207 A C 1397 A
G 1401 A C 1402 A C 1403 A A 1493 A G 1494 A C
1496 A G 1497 A U 1498 A G 1517 A

1.71

177.3

-1.48

-0.66

16.4

U 420 A U 512 A C 513 A C 528 A A 532 A U 534 A G
785 A A 790 A G 791 A A 792 A U 793 A U 991 A U
992 A G 993 A G 1042 A C 1043 A A 1044 A C 1045 A
A 1046 A U 1196 A G 1206 A G 1207 A C 1208 A C
1210 A U 1211 A U 1212 A C 1397 A G 1401 A C 1402
A C 1403 A A 1493 A G 1494 A C 1496 A G 1497 A U
1498 A G 1517 A

1.19

175.1

-0.83

-0.71

8.3

U 14 A A 913 A A 914 A A 915 A C 924 A G 933 A C
934 A A 935 A G 966 A C 967 A A 968 A U 1065 A G
1088 A G 1089 A U 1159 A G 1160 A A 1167 A A 1168
A A 1169 A G 1171 A C 1172 A G 1173 A G 1174 A G
1182 A A 1183 A G 1185 A G 1186 A G 1187 A C 1195
A U 1196 A C 1342 A G 1343 A C 1344 A U 1345 A A
1346 A C 1384 A G 1385 A A 1396 A C 1397 A A 1398
A C 1399 A C 1400 A G 1401 A C 1402 A C 1403 A C
1404 A G 1405 A U 1406 A C 1407 A A 1408 A G 1486
A G 1487 A G 1488 A G 1489 A C 1490 A G 1491 A A
1493 A G 1494 A G 1516 A G 1517 A

1.72

181.9

-1.05

-0.58

13.0

G 35 A A 50 A A 51 A G 52 A A 53 A C 54 A A 55 A
U 56 A G 57 A C 58 A A 59 A G 61 A A 101 A A 116
A G 117 A U 287 A A 288 A G 331 A A 338 A C 339 A
U 340 A A 349 A G 350 A G 351 A C 352 A G 361 A G
362 A G 500 A G 540 A G 1423 A C 1424 A

1.24

3.60

205.2

-0.16

-0.42

7.5

A 572 A A 573 A A 665 A G 668 A U 669 A G 670 A G
671 A U 672 A G 673 A G 711 A A 712 A G 713 A G
714 A A 715 A A 716 A C 717 A U 723 A G 724 A C
732 A A 733 A C 736 A A 767 A U 804 A C 805 A C
806 A G 855 A C 856 A C 866 A G 867 A G 887 A G
888 A A 915 A G 916 A G 917 A A 918 A A 919 A G
1392 A U 1393 A A 1394 A C 1403 A C 1404 A G 1405
A U 1406 A C 1407 A A 1408 A G 1486 A G 1487 A G
1488 A G 1489 A C 1490 A G 1491 A G 1494 A G 1516
A G 1517 A G 1525 A G 1526 A C 1527 A U 1528 A G
1529 A

1.72

1.79

216.1

-0.94

-0.48

12.6

G 670 A G 671 A U 672 A G 673 A G 674 A A 675 A A
676 A U 677 A U 678 A C 679 A A 706 A C 707 A C
708 A G 709 A G 710 A G 711 A A 712 A G 713 A G
929 A C 930 A C 931 A C 932 A U 1085 A U 1086 A G
1087 A G 1089 A U 1090 A U 1091 A G 1094 A C 1096
A C 1097 A A 1105 A G 1160 A C 1161 A A 1169 A G
1171 A U 1380 A U 1381 A G 1387 A C 1533 A A 1534
A

1.66

210.8

-0.57

-0.72

7.2

A 572 A A 573 A A 665 A G 668 A U 669 A G 670 A G
671 A U 672 A G 673 A G 711 A A 712 A G 713 A G
714 A A 715 A A 716 A C 717 A U 723 A G 724 A C
732 A A 733 A A 767 A U 804 A C 805 A C 806 A G
855 A C 856 A C 866 A G 867 A G 887 A G 888 A A
915 A G 916 A G 917 A A 918 A A 919 A G 1392 A U
1393 A A 1394 A C 1403 A C 1404 A G 1405 A U 1406
A C 1407 A A 1408 A G 1486 A G 1487 A G 1488 A G
1489 A C 1490 A G 1491 A G 1494 A G 1516 A G 1517
A G 1525 A G 1526 A C 1527 A U 1528 A G 1529 A

1.50

220.5

-0.61

-0.54

10.2

G 530 A U 531 A U 960 A U 961 A C 962 A A 983 A C
984 A C 985 A A 986 A G 987 A U 1049 A C 1051 A C
1214 A G 1216 A C 1217 A C 1218 A U 1257 A G 1258
A C 1259 A C 1260 A A 1261 A C 1262 A G 1271 A G
1272 A G 1273 A G 1274 A A 1275 A U 1315 A G 1316
A A 1360 A U 1406 A C 1407 A A 1408 A C 1409 A G
1410 A C 1411 A C 1412 A G 1482 A A 1483 A C 1484
A U 1485 A G 1486 A G 1487 A A 1492 A G 1516 A G
1517 A

1.73

1.77

227.2

-1.14

-0.52

11.5

G 670 A G 671 A U 672 A G 673 A G 674 A A 675 A A
676 A U 677 A U 678 A C 679 A G 693 A A 706 A C
707 A C 708 A G 709 A G 710 A G 711 A A 712 A G
713 A A 937 A A 938 A G 939 A C 940 A G 941 A G
1300 A C 1335 A C 1336 A G 1337 A A 1339 A A 1340
A U 1341 A A 1503 A G 1505 A A 1507 A A 1534 A

1.78

225.7

-0.64

-0.57

8.9

A 51 A G 52 A A 53 A C 54 A A 55 A U 56 A G 57 A
C 58 A A 59 A G 61 A A 101 A A 116 A G 238 A U
239 A C 240 A G 286 A U 287 A A 288 A G 302 A A
303 A U 304 A G 331 A A 338 A C 339 A U 340 A A
349 A G 350 A G 351 A C 352 A C 564 A G 567 A G
568 A C 569 A G 821 A C 822 A G 823 A C 824 A G
825 A C 826 A U 827 A G 830 A U 831 A C 832 A U
833 A C 834 A U 835 A C 846 A C 847 A G 848 A U
850 A G 851 A G 852 A G 854 A U 870 A U 871 A A
872 A A 873 A C 877 A G 878 A C 879 A C 880 A G
1423 A C 1424 A C 1478 A C 1479 A

1.55

290.8

-0.73

-0.72

7.6

A 51 A A 116 A G 117 A U 118 A A 119 A A 120 A C
121 A G 145 A G 146 A G 147 A G 148 A A 149 A C
150 A G 167 A G 168 A U 170 A A 171 A A 172 A C
175 A G 199 A G 205 A C 207 A U 208 A U 209 A C
210 A G 211 A G 212 A G 213 A U 214 A G 259 A G
260 A U 261 A C 267 A G 286 A U 287 A G 318 A G
319 A C 320 A A 321 A C 322 A U 323 A C 328 A A
908 A A 909 A U 1406 A C 1407 A A 1408 A C 1409 A
G 1410 A C 1411 A C 1412 A A 1413 A G 1423 A C
1424 A U 1425 A C 1437 A G 1438 A A 1447 A C 1448
A C 1449 A U 1450 A A 1457 A C 1478 A C 1479 A G
1480 A U 1481 A G 1482 A A 1483 A C 1484 A U 1485
A G 1486 A G 1487 A G 1516 A G 1517 A

1.55

1.76

329.9

-1.01

-0.59

13.1

G 61 A A 101 A G 102 A C 103 A G 104 A G 148 A A
149 A C 150 A C 163 A U 164 A C 174 A C 175 A G
247 A U 249 A A 250 A G 251 A U 252 A G 259 A G
260 A U 261 A G 266 A C 267 A C 268 A C 269 A A
270 A C 271 A C 272 A A 273 A A 274 A G 275 A A
321 A C 322 A U 323 A U 582 A G 668 A U 669 A G
670 A G 671 A U 672 A G 673 A G 711 A A 712 A G
713 A G 714 A A 715 A A 716 A C 717 A C 732 A C
762 A G 763 A C 764 A G 765 A A 767 A C 806 A A
807 A C 808 A G 809 A C 1437 A G 1438 A C 1465 A
C 1466 A G 1467 A

1.51

414.7

-1.03

-0.63

12.2

G 145 A G 146 A G 147 A G 148 A A 149 A C 150 A G
167 A G 168 A U 170 A A 171 A A 172 A C 175 A C
177 A G 199 A G 205 A C 207 A U 208 A U 209 A C
210 A G 211 A G 212 A G 213 A U 214 A G 247 A U
249 A A 250 A G 251 A U 252 A U 253 A G 259 A G
260 A U 261 A G 266 A C 267 A C 268 A C 269 A A
270 A C 271 A C 272 A A 273 A A 274 A G 275 A A
321 A C 322 A U 323 A U 582 A G 668 A U 669 A G
670 A G 671 A U 672 A G 673 A G 711 A A 712 A G
713 A G 714 A A 715 A A 716 A C 717 A C 732 A C
762 A G 763 A C 764 A G 765 A A 767 A C 806 A A
807 A C 808 A G 809 A C 1437 A G 1438 A A 1447 A
C 1448 A C 1449 A U 1450 A A 1457 A C 1465 A C
1466 A G 1467 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.