PDBsum entry 1vln Go to PDB code:  Tunnel analysis for: 1vln calculated with MOLE 2.0 PDB id 1vln Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.33 31.4 -0.27 -0.26 10.1 75 2 2 2 4 4 0 0   2 1.06 2.06 35.5 -1.45 -0.38 23.0 79 1 4 4 4 2 0 0   3 1.53 1.53 17.5 -0.74 -0.51 17.0 89 2 2 1 2 0 0 0   4 0.76 3.30 41.5 0.23 -0.05 6.4 88 1 0 3 3 2 0 0   5 1.38 1.71 19.2 -0.51 -0.26 10.8 79 2 1 0 2 1 2 0   6 1.42 1.48 19.7 -1.79 -0.50 26.0 75 1 2 0 1 0 1 0   7 1.31 1.41 15.7 -1.63 -0.71 22.8 91 0 4 2 3 0 0 0   8 1.27 1.27 16.5 -1.26 -0.54 19.9 87 1 3 1 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.