PDBsum entry 1v5y Go to PDB code:  Pore analysis for: 1v5y calculated with MOLE 2.0 PDB id 1v5y Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.85 2.45 28.7 -2.33 -0.45 19.1 90 5 1 5 0 1 0 0  FMN 454 B 2 1.77 2.45 29.2 -1.84 -0.17 17.5 82 4 0 4 3 3 0 0  FMN 1454 A 3 1.24 1.36 30.4 -0.65 -0.09 11.1 84 3 1 5 7 2 0 0   4 2.03 2.03 30.8 -0.69 0.00 13.6 80 4 2 4 4 4 1 0  FMN 1454 A 4HC 1201 B 5 1.25 1.36 38.8 -0.36 -0.05 9.7 83 4 1 5 7 4 0 0   6 1.78 2.42 41.1 -1.29 -0.21 15.5 82 6 2 4 3 3 1 0  FMN 1454 A 4HC 1201 B 7 1.85 2.42 43.2 -1.00 -0.25 13.5 81 7 2 4 2 3 1 0  4HC 1455 A FMN 454 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.