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PDBsum entry 1tro

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 1tro calculated with MOLE 2.0 PDB id
1tro
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.13 1.24 63.9 -1.88 -0.48 30.1 76 3 5 1 5 0 0 0  DG 2 K DT 14 L DA 15 L
2 1.48 1.67 87.5 -0.85 -0.60 14.6 84 1 8 1 5 0 0 0  DT 10 I DA 11 I DA 12 I DC 13 I DT 14 I DT 10 J D
A 11 J DA 12 J DC 13 J DT 14 J DA 15 J DG 16 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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