PDBsum entry 1tro Go to PDB code:  Tunnel analysis for: 1tro calculated with MOLE 2.0 PDB id 1tro Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 3.14 39.8 1.21 0.23 10.3 66 0 4 0 13 1 0 0  DA 12 K DC 13 K DT 14 K DT 10 L DA 11 L 2 1.26 2.53 40.1 1.11 0.18 10.3 69 0 4 0 12 1 0 0  DA 12 K DC 13 K DT 14 K DT 10 L DA 11 L 3 1.24 3.15 41.1 1.42 0.35 10.5 66 0 4 0 13 1 0 0  DT 10 K DA 11 K DA 12 L DC 13 L DT 14 L 4 1.26 2.79 41.4 1.18 0.25 11.7 69 0 4 0 12 1 0 0  DT 10 K DA 11 K DA 12 L DC 13 L DT 14 L Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.