PDBsum entry 1tp7

Pore analysis for: 1tp7 calculated with

MOLE 2.0

PDB id

1tp7

Pores calculated on whole structure

Pores calculated excluding ligands

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15 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.70

1.88

29.1

-0.76

-0.26

17.0

80

4

2

3

2

2

0

1

2

1.74

1.94

29.4

-0.99

-0.36

16.2

80

2

2

2

3

1

1

0

3

3.12

4.90

35.3

-3.40

-0.51

41.8

77

6

7

1

0

1

2

0

4

1.23

3.05

105.1

-0.53

-0.02

14.5

79

8

7

4

9

6

0

1

MSE 154 D MSE 231 D MSE 339 D

5

1.28

3.84

110.6

-2.36

-0.34

24.8

77

11

7

6

2

6

2

0

6

1.15

1.59

113.9

-1.42

-0.36

23.9

84

11

8

5

7

1

1

0

MSE 224 D MSE 252 D

7

2.11

2.81

143.4

-2.21

-0.45

24.4

81

14

9

7

6

4

3

0

MSE 252 D

8

1.26

1.26

155.4

-1.85

-0.42

24.4

82

15

13

8

7

5

1

1

MSE 154 D

9

1.24

1.28

157.2

-1.38

-0.33

19.8

82

14

12

6

11

5

2

1

MSE 154 D MSE 252 D

10

1.25

1.25

181.0

-1.28

-0.29

21.5

80

18

13

6

11

6

1

1

MSE 154 D MSE 224 D

11

2.45

4.84

37.1

-2.50

-0.46

33.8

78

6

5

3

1

2

1

0

12

1.31

1.34

40.6

-0.99

-0.32

18.6

82

4

4

4

2

3

0

1

MSE 154 A

13

2.60

2.71

47.5

-2.53

-0.64

28.3

85

7

2

2

0

0

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.