PDBsum entry 1t5t

Pore analysis for: 1t5t calculated with

MOLE 2.0

PDB id

1t5t

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

9 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.61

2.72

27.0

-0.17

-0.32

12.3

89

2

1

0

6

0

0

0

2

1.43

1.52

32.7

-1.92

-0.64

14.8

80

4

5

4

1

1

3

0

3

2.35

2.51

34.0

-1.76

-0.41

29.5

88

5

3

1

3

0

0

0

4

2.33

2.49

38.2

-1.22

-0.23

25.9

86

7

3

0

6

0

0

0

5

1.52

1.59

45.6

-1.74

-0.48

23.3

85

8

3

3

4

1

2

0

6

1.39

1.73

45.6

-2.08

-0.58

26.8

84

8

5

2

2

1

0

0

7

1.94

1.94

46.9

-1.24

-0.52

20.3

87

5

5

3

5

1

2

0

8

2.58

2.68

48.9

-0.94

-0.43

15.3

88

3

4

2

5

0

2

0

9

1.16

1.34

56.9

-1.60

-0.24

26.8

80

8

7

2

5

2

1

1

ADP 1001 A

10

1.12

1.32

77.6

-2.05

-0.50

26.8

83

8

8

5

6

1

1

1

ADP 1001 A ALF 1002 A MG 1005 A MG 1007 A

11

1.20

1.38

94.5

-1.87

-0.53

24.4

84

10

9

5

7

1

3

1

ADP 1001 A ALF 1002 A MG 1005 A MG 1007 A

12

1.42

1.49

95.9

-2.02

-0.63

18.7

84

6

5

7

3

0

3

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.