PDBsum entry 1soj Go to PDB code:  Pore analysis for: 1soj calculated with MOLE 2.0 PDB id 1soj Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.87 3.09 42.1 -1.71 -0.56 14.8 94 2 5 7 6 0 0 0   2 1.18 1.27 57.0 -1.40 -0.60 15.5 88 3 4 4 7 0 2 0   3 2.96 3.00 65.3 -1.58 -0.39 15.4 78 5 8 6 9 2 8 0   4 2.16 2.36 66.5 -1.40 -0.32 19.3 78 8 5 3 7 1 6 0   5 2.16 2.36 67.9 -1.36 -0.32 18.3 78 8 4 3 7 1 6 0   6 2.21 2.58 70.6 -0.90 -0.06 16.4 76 6 3 2 6 1 6 0   7 2.19 2.34 73.9 -1.38 -0.31 19.9 81 10 7 1 5 1 4 0   8 2.20 2.61 83.2 -2.28 -0.52 21.8 78 6 6 6 5 1 6 0   9 2.94 3.17 83.2 -0.97 -0.18 15.9 76 9 5 2 10 2 8 0   10 2.22 2.58 89.0 -1.14 -0.24 14.8 75 6 6 4 8 1 10 0   11 2.84 2.84 99.1 -1.06 -0.21 17.0 77 9 10 2 10 2 8 0   12 2.22 2.35 100.6 -1.43 -0.32 21.0 79 13 8 2 8 2 6 0   13 2.86 3.13 108.4 -1.37 -0.24 23.3 78 11 11 4 12 3 7 0   14 2.26 2.31 110.0 -1.39 -0.37 19.6 82 12 9 2 8 1 6 0   15 1.97 2.56 110.1 -1.58 -0.38 23.3 82 14 10 3 9 2 4 1   16 2.96 2.97 110.7 -1.48 -0.34 23.2 80 11 11 5 13 2 7 0   17 2.92 2.94 112.9 -1.09 -0.16 19.9 77 14 8 1 11 3 8 0   18 1.89 2.06 117.8 -1.34 -0.31 21.7 80 10 11 4 12 2 7 0   19 2.25 2.53 120.5 -1.50 -0.30 21.6 80 11 9 4 9 1 6 0   20 2.07 2.22 122.2 -1.07 -0.22 18.7 79 13 9 1 11 2 8 0   21 2.88 2.88 125.4 -1.41 -0.27 22.5 79 12 11 4 13 2 8 0   22 1.41 1.41 146.6 -1.44 -0.48 14.1 85 10 8 9 11 2 6 0   23 2.84 2.84 158.2 -1.42 -0.27 22.9 79 18 14 3 14 3 8 0   24 1.17 1.42 162.9 -0.57 0.00 14.3 77 14 11 3 16 7 10 0  IBM 2119 I 25 1.90 2.03 167.6 -1.42 -0.32 22.4 81 17 15 3 14 2 8 0   26 1.06 0.99 175.3 -1.01 -0.20 17.5 76 14 12 6 17 6 12 0   27 1.91 1.99 185.6 -1.03 -0.29 15.8 83 13 16 17 19 3 10 1   28 1.85 1.95 190.1 -0.92 -0.24 14.6 83 16 13 15 18 3 11 1   29 1.21 1.21 204.0 -1.51 -0.44 17.7 84 15 14 10 17 3 8 0   30 1.18 2.68 248.2 -0.53 -0.09 13.3 79 16 11 13 21 12 6 0  IBM 2119 I Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.