PDBsum entry 1soj Go to PDB code:  Tunnel analysis for: 1soj calculated with MOLE 2.0 PDB id 1soj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.43 1.43 15.6 -0.88 -0.48 15.8 71 1 1 1 3 0 0 0   2 1.41 1.43 19.3 -0.81 -0.19 17.8 78 2 1 1 3 0 0 0   3 1.41 1.41 15.5 -0.88 -0.48 15.8 71 1 1 1 3 0 0 0   4 1.39 1.41 20.3 -0.69 -0.02 7.3 76 1 1 2 3 2 0 0   5 1.41 1.43 15.1 -0.54 -0.24 18.1 77 1 1 1 3 0 0 0   6 1.38 1.41 16.3 -0.40 -0.14 15.5 74 1 1 1 4 0 0 0   7 2.04 2.27 16.9 0.12 -0.37 2.7 75 0 0 2 4 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.