PDBsum entry 1rtj Go to PDB code:  Pore analysis for: 1rtj calculated with MOLE 2.0 PDB id 1rtj Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.06 2.90 28.3 -1.45 -0.01 12.0 80 3 0 3 3 2 1 0   2 2.05 2.93 29.8 -1.20 0.05 14.2 85 4 1 2 5 2 0 0   3 1.42 1.42 34.6 -0.66 -0.03 20.7 90 5 2 1 2 0 0 0   4 1.12 2.68 35.9 -0.33 0.09 14.4 75 1 1 2 8 1 3 0   5 1.69 2.84 69.4 -0.29 0.24 11.3 78 3 4 3 7 4 1 0   6 1.29 1.57 76.3 -1.49 -0.22 11.1 77 3 3 5 4 5 4 0   7 1.24 1.24 96.9 -0.83 -0.25 12.7 79 6 4 6 8 6 1 0   8 1.30 1.59 137.2 -1.17 -0.17 20.9 76 7 8 5 7 6 4 0   9 1.73 2.79 138.7 -1.43 -0.23 19.0 77 7 8 8 8 6 1 0   10 1.37 1.37 141.9 -1.79 -0.44 19.4 81 9 8 7 7 5 0 0   11 1.80 1.94 148.3 -1.04 -0.10 20.4 78 9 9 7 10 7 2 0   12 1.20 1.21 151.4 -0.76 -0.02 16.6 77 11 9 4 13 8 1 0   13 1.37 1.37 158.0 -1.35 -0.14 17.5 76 9 7 7 10 9 4 0   14 1.21 1.29 179.2 -0.95 -0.09 16.4 75 13 11 4 8 8 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.