PDBsum entry 1rtj Go to PDB code:  Tunnel analysis for: 1rtj calculated with MOLE 2.0 PDB id 1rtj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.27 28.3 -0.39 0.09 5.4 76 1 1 2 6 4 0 0   2 1.11 1.27 28.3 0.06 0.25 10.6 78 3 1 0 6 4 0 0   3 1.11 1.26 31.7 -0.16 0.33 7.8 75 3 0 1 6 4 0 0   4 1.11 1.26 33.3 -0.09 0.34 5.2 77 1 0 2 8 5 0 0   5 1.38 1.38 19.5 -0.12 0.62 8.2 61 0 2 0 3 5 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.