PDBsum entry 1rtd Go to PDB code:  Pore analysis for: 1rtd calculated with MOLE 2.0 PDB id 1rtd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.11 3.22 97.1 -0.93 -0.51 13.8 77 6 5 1 3 1 1 0  DC 4 E DA 5 E DC 6 E DC 7 E DG 8 E DG 9 E DC 10 E DC 18 E DA 19 E DG 20 E DG 21 E DG 22 E DA 23 E DC 24 E DT 25 E DA 3 F DG 4 F DC 13 F DG 14 F DA 15 F DG 16 F DC 17 F DG 18 F 2 1.30 1.27 125.6 -1.00 -0.27 23.3 75 5 3 0 7 0 1 0  DC 4 E DA 5 E DC 17 F DG 18 F DC 19 F DC 20 F 3 1.36 1.50 33.9 -1.27 -0.68 12.6 88 3 1 2 2 0 0 0  DG 22 G DA 23 G DC 24 G DC 7 H DC 8 H 4 1.77 2.28 38.9 -1.21 -0.64 16.6 83 4 2 2 2 0 0 0  DA 23 G DC 24 G 5 1.18 1.25 63.3 -0.79 -0.36 13.6 83 5 4 2 5 0 3 0  DG 9 G DC 10 G DG 11 G DC 12 G DT 13 G DC 14 G DG 15 G DT 9 H DG 10 H DT 11 H DT 12 H DC 13 H DG 14 H DA 15 H 6 1.83 1.83 121.9 -1.82 -0.56 24.0 79 10 7 3 2 1 1 0  DC 10 G DG 11 G DC 12 G DT 13 G DC 14 G DG 15 G DC 18 G DA 19 G DG 20 G DG 21 G DA 23 G DC 24 G DC 2 H DA 3 H DG 4 H DT 9 H DG 10 H DT 11 H DT 12 H DC 13 H DG 14 H DA 15 H 7 1.20 1.27 140.0 -1.12 -0.38 17.3 80 12 7 5 7 2 4 0  DG 9 G DC 10 G DC 18 G DA 19 G DG 20 G DG 21 G DA 23 G DC 24 G DC 2 H DA 3 H DG 4 H DC 13 H DG 14 H Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.