PDBsum entry 1rt2

Pore analysis for: 1rt2 calculated with

MOLE 2.0

PDB id

1rt2

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

10 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.11

2.42

30.2

-1.58

-0.60

8.7

75

3

1

3

1

3

1

0

2

1.71

2.48

35.2

-0.34

-0.09

16.7

78

4

2

0

4

1

2

0

TNK 999 A

3

1.24

1.24

43.3

-1.37

-0.28

14.5

74

7

4

2

3

4

2

0

4

1.23

1.23

46.9

-1.55

-0.24

16.6

74

8

6

2

4

4

2

0

5

3.59

4.60

52.9

-2.37

-0.34

30.0

66

6

5

0

2

5

2

0

6

1.27

1.27

55.0

-1.18

-0.13

10.6

76

7

2

3

4

4

2

0

7

1.23

1.23

58.6

-1.25

-0.08

11.4

75

8

4

3

5

5

2

0

8

1.74

1.82

63.0

-0.99

-0.17

12.6

77

6

2

4

4

4

2

0

9

3.57

3.57

63.1

-2.26

-0.21

25.7

71

8

5

1

4

5

2

0

10

1.73

1.80

64.5

-0.56

0.32

13.0

74

3

2

2

6

4

1

0

11

1.38

1.89

65.3

-0.03

0.27

9.9

67

2

2

1

7

5

2

0

TNK 999 A

12

1.35

1.48

66.7

-1.55

-0.23

15.4

77

5

3

5

3

5

0

0

13

1.24

1.24

78.3

-1.97

-0.37

24.5

74

11

8

2

6

5

0

0

14

1.41

1.93

85.5

0.09

0.48

9.3

70

3

2

2

9

8

1

0

TNK 999 A

15

1.26

1.26

89.6

-2.19

-0.44

27.7

77

11

10

2

5

4

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.