PDBsum entry 1q9m Go to PDB code:  Tunnel analysis for: 1q9m calculated with MOLE 2.0 PDB id 1q9m Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.28 39.3 -1.31 -0.26 24.0 76 3 4 3 6 2 0 0   2 1.28 1.28 45.9 -1.91 -0.27 33.1 81 7 6 1 5 1 1 0   3 1.27 1.28 47.6 -2.27 -0.43 33.8 82 8 7 1 6 1 1 0   4 1.28 1.28 47.8 -0.85 -0.15 20.5 79 5 5 4 8 2 0 0   5 1.28 1.29 49.7 -1.93 -0.27 33.5 82 8 7 1 7 1 1 0   6 1.28 1.28 50.1 -1.95 -0.29 33.9 80 8 9 1 7 1 1 0   7 1.27 1.28 61.1 -1.78 -0.37 21.8 78 6 5 6 8 2 0 0   8 1.27 2.81 16.1 1.23 0.06 4.5 72 1 0 0 7 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.