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PDBsum entry 1pyh
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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1pyh calculated with MOLE 2.0 PDB id
1pyh
Pores calculated on whole structure Pores calculated excluding ligands
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16 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.99 3.99 33.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 13 1 UNK 17 1 UNK 21 1 UNK 119 A UNK 175 A
UNK 235 A UNK 238 A UNK 239 A UNK 242 A UNK 1 B
UNK 6 B UNK 7 B UNK 38 B UNK 41 B UNK 42 B UNK
204 C UNK 22 V UNK 25 V UNK 18 X UNK 20 X UNK 21
X UNK 24 X UNK 25 X UNK 12 Z UNK 14 Z UNK 18 Z
UNK 21 Z UNK 22 Z UNK 25 Z UNK 28 Z
2 3.20 3.20 38.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 12 1 UNK 13 1 UNK 14 1 UNK 15 1 UNK 17 1 UNK
18 1 UNK 21 1 UNK 12 3 UNK 13 3 UNK 16 3 UNK 17 3
UNK 16 A UNK 105 A UNK 115 A UNK 119 A UNK 1 B
UNK 204 C UNK 12 Z UNK 14 Z UNK 18 Z
3 2.29 2.29 46.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 14 1 UNK 16 1 UNK 17 1 UNK 18 1 UNK 20 1 UNK
21 1 UNK 13 3 UNK 12 5 UNK 13 5 UNK 14 5 UNK 15 5
UNK 18 5 UNK 13 7 UNK 17 7 UNK 13 A UNK 15 A UNK
16 A UNK 19 A UNK 20 A UNK 21 A UNK 105 A UNK 109
A UNK 115 A UNK 119 A UNK 1 B UNK 241 C UNK 245 C
UNK 12 Z UNK 14 Z UNK 15 Z UNK 18 Z
4 2.12 2.12 49.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  BPH 401 A UNK 30 B UNK 33 B UNK 57 B UNK 60 B UNK
61 B UNK 22 P UNK 23 P BCL 39 P UNK 19 Q UNK 18 R
UNK 20 R UNK 21 R UNK 22 R UNK 24 R UNK 18 T UNK
19 T UNK 21 T UNK 22 T UNK 25 T UNK 16 V UNK 17 V
UNK 20 V UNK 21 V UNK 14 W UNK 15 W
5 2.54 2.54 55.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 175 A UNK 178 A UNK 181 A UNK 182 A UNK 220 A
UNK 222 A BCL 301 A BPH 401 A UNK 36 B UNK 38 B
UNK 39 B UNK 67 B UNK 119 B UNK 120 B UNK 122 B
UNK 123 B UNK 157 B UNK 161 B UNK 162 B UNK 175 B
UNK 176 B UNK 177 B UNK 178 B UNK 182 B BCL 303 B
UNK 26 N UNK 29 N UNK 30 N UNK 33 N UNK 24 P UNK
27 P UNK 28 P UNK 31 P UNK 32 P UNK 22 V UNK 23 V
UNK 25 V UNK 20 X UNK 21 X UNK 24 X UNK 25 X
6 1.98 1.98 68.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 61 B UNK 62 B UNK 120 B UNK 123 B UNK 124 B
UNK 127 B UNK 155 B UNK 158 B UNK 162 B UNK 282 B
UNK 285 B UNK 10 C UNK 12 C UNK 15 C UNK 16 C UNK
18 C UNK 33 H UNK 28 J UNK 29 J UNK 31 J UNK 32 J
UNK 35 J UNK 33 K UNK 25 L UNK 26 L UNK 28 L UNK
29 L UNK 32 L UNK 25 N UNK 28 N UNK 29 N UNK 22 P
UNK 23 P UNK 25 P UNK 26 P UNK 28 P UNK 29 P UNK
19 Q UNK 24 R
7 1.95 1.95 68.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 148 B UNK 278 B UNK 282 B UNK 10 C UNK 12 C
UNK 15 C UNK 16 C UNK 18 C UNK 22 C UNK 23 C UNK
25 C UNK 26 C UNK 55 C UNK 22 F UNK 21 H UNK 22 H
UNK 25 H UNK 33 H UNK 18 J UNK 21 J UNK 22 J UNK
28 J UNK 29 J UNK 31 J UNK 32 J UNK 35 J UNK 33 K
UNK 25 L UNK 28 L UNK 32 L
8 3.03 3.03 71.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 120 B UNK 123 B UNK 127 B UNK 148 B UNK 151 B
UNK 154 B UNK 155 B UNK 158 B UNK 162 B UNK 278 B
UNK 22 C UNK 23 C UNK 25 C UNK 26 C UNK 55 C UNK
22 F UNK 21 H UNK 22 H UNK 25 H UNK 18 J UNK 21 J
UNK 22 J UNK 25 L UNK 25 N UNK 26 N UNK 28 N UNK
29 N UNK 30 N UNK 32 N UNK 33 N UNK 24 P UNK 27 P
UNK 28 P UNK 31 P UNK 32 P
9 1.94 1.94 72.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 120 B UNK 123 B UNK 127 B UNK 155 B UNK 158 B
UNK 162 B UNK 282 B UNK 285 B UNK 10 C UNK 12 C
UNK 15 C UNK 16 C UNK 18 C UNK 33 H UNK 28 J UNK
29 J UNK 31 J UNK 32 J UNK 35 J UNK 33 K UNK 25 L
UNK 26 L UNK 28 L UNK 29 L UNK 32 L BCL 11 N UNK
25 N UNK 26 N UNK 28 N UNK 29 N UNK 30 N UNK 32 N
UNK 33 N BCL 38 N UNK 26 O UNK 24 P UNK 27 P UNK
28 P UNK 31 P UNK 32 P BCL 38 P
10 2.56 2.56 76.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 127 B UNK 128 B UNK 130 B UNK 131 B UNK 134 B
UNK 148 B UNK 151 B UNK 22 C UNK 23 C UNK 25 C
UNK 26 C UNK 22 F UNK 21 H UNK 22 H UNK 25 H UNK
18 J UNK 21 J UNK 22 J UNK 18 L UNK 21 L UNK 22 L
UNK 19 N UNK 22 N UNK 23 N UNK 25 N BCL 38 N UNK
15 O UNK 16 O UNK 19 O UNK 20 P UNK 21 P UNK 24 P
UNK 25 P UNK 14 Q UNK 17 Q UNK 18 Q UNK 21 Q
11 1.96 1.96 80.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 124 B UNK 127 B UNK 155 B UNK 158 B UNK 282 B
UNK 285 B UNK 10 C UNK 12 C UNK 15 C UNK 16 C UNK
18 C UNK 33 H UNK 28 J UNK 29 J UNK 31 J UNK 32 J
UNK 35 J UNK 33 K UNK 25 L UNK 26 L UNK 28 L UNK
29 L UNK 32 L UNK 19 N UNK 22 N UNK 23 N UNK 25 N
UNK 26 N UNK 28 N UNK 29 N BCL 38 N UNK 15 O UNK
16 O UNK 19 O UNK 20 P UNK 21 P UNK 24 P UNK 25 P
UNK 14 Q UNK 17 Q UNK 18 Q UNK 21 Q
12 2.57 2.57 81.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 175 A UNK 178 A UNK 181 A UNK 182 A UNK 220 A
UNK 222 A BCL 301 A BPH 401 A UNK 36 B UNK 38 B
UNK 39 B UNK 67 B UNK 122 B UNK 123 B UNK 124 B
UNK 126 B UNK 127 B UNK 157 B UNK 158 B UNK 162 B
UNK 175 B UNK 176 B UNK 177 B UNK 178 B UNK 182 B
BCL 303 B UNK 19 N UNK 22 N UNK 23 N UNK 25 N UNK
26 N UNK 29 N BCL 38 N UNK 15 O UNK 16 O UNK 19 O
UNK 20 P UNK 21 P UNK 24 P UNK 25 P UNK 14 Q UNK
17 Q UNK 18 Q UNK 22 V UNK 23 V UNK 25 V UNK 20 X
UNK 21 X UNK 24 X UNK 25 X
13 2.68 2.68 83.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 61 B UNK 62 B UNK 120 B UNK 123 B UNK 124 B
UNK 127 B UNK 148 B UNK 151 B UNK 154 B UNK 155 B
UNK 158 B UNK 162 B UNK 278 B UNK 22 C UNK 23 C
UNK 25 C UNK 26 C UNK 55 C UNK 22 F UNK 21 H UNK
22 H UNK 25 H UNK 18 J UNK 21 J UNK 22 J UNK 25 L
UNK 25 N UNK 28 N UNK 29 N UNK 22 P UNK 23 P UNK
25 P UNK 26 P UNK 28 P UNK 29 P UNK 24 R
14 1.95 1.95 90.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 175 A UNK 178 A UNK 181 A UNK 182 A UNK 220 A
UNK 222 A BCL 301 A BPH 401 A UNK 36 B UNK 38 B
UNK 39 B UNK 67 B UNK 122 B UNK 123 B UNK 126 B
UNK 127 B UNK 155 B UNK 157 B UNK 158 B UNK 162 B
UNK 175 B UNK 176 B UNK 177 B UNK 178 B UNK 182 B
UNK 282 B UNK 285 B BCL 303 B UNK 10 C UNK 12 C
UNK 15 C UNK 16 C UNK 18 C UNK 33 H UNK 28 J UNK
29 J UNK 31 J UNK 32 J UNK 35 J UNK 33 K UNK 25 L
UNK 26 L UNK 28 L UNK 29 L UNK 32 L UNK 25 N UNK
28 N UNK 29 N UNK 22 V UNK 23 V UNK 25 V UNK 20 X
UNK 21 X UNK 24 X UNK 25 X
15 2.79 2.79 91.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 175 A UNK 178 A UNK 181 A UNK 182 A UNK 220 A
UNK 222 A BCL 301 A BPH 401 A UNK 36 B UNK 38 B
UNK 39 B UNK 67 B UNK 122 B UNK 123 B UNK 126 B
UNK 127 B UNK 148 B UNK 151 B UNK 154 B UNK 155 B
UNK 157 B UNK 158 B UNK 162 B UNK 175 B UNK 176 B
UNK 177 B UNK 178 B UNK 182 B UNK 278 B BCL 303 B
UNK 22 C UNK 23 C UNK 25 C UNK 26 C UNK 22 F UNK
21 H UNK 22 H UNK 25 H UNK 18 J UNK 21 J UNK 22 J
UNK 25 L UNK 25 N UNK 28 N UNK 29 N UNK 22 V UNK
23 V UNK 25 V UNK 20 X UNK 21 X UNK 24 X UNK 25 X

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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