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PDBsum entry 1p9s

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Hydrolase PDB id
1p9s
Contents
Protein chains
300 a.a. *
Ligands
DIO ×2
Waters ×32
* Residue conservation analysis

References listed in PDB file
Key reference
Title Coronavirus main proteinase (3clpro) structure: basis for design of anti-Sars drugs.
Authors K.Anand, J.Ziebuhr, P.Wadhwani, J.R.Mesters, R.Hilgenfeld.
Ref. Science, 2003, 300, 1763-1767. [DOI no: 10.1126/science.1085658]
PubMed id 12746549
Abstract
A novel coronavirus has been identified as the causative agent of severe acute respiratory syndrome (SARS). The viral main proteinase (Mpro, also called 3CLpro), which controls the activities of the coronavirus replication complex, is an attractive target for therapy. We determined crystal structures for human coronavirus (strain 229E) Mpro and for an inhibitor complex of porcine Mpro, and we constructed a homology model for SARS coronavirus (SARS-CoV) Mpro. The structures reveal a remarkable degree of conservation of the substrate-binding sites, which is further supported by recombinant SARS-CoV Mpro-mediated cleavage of a TGEV Mpro substrate. Molecular modeling suggests that available rhinovirus 3Cpro inhibitors may be modified to make them useful for treating SARS.
Figure 2.
Fig. 2. Dimer of HCoV Mpro. The N-terminal residues of each chain squeeze between domains II and III of the parent monomer and domain II of the other monomer. N and C termini are labeled by cyan and magenta spheres and the letters N and C, respectively.
Figure 4.
Fig. 4. Derivatives of the antirhinoviral drug AG7088 should inhibit coronavirus Mpros. A superimposition (stereo image) of the substrate-binding regions of TGEV Mpro (marine) in complex with the hexapeptidyl CMK inhibitor (red) and HRV2 3C^pro (green) in complex with the inhibitor AG7088 (yellow) is shown.
The above figures are reprinted by permission from the AAAs: Science (2003, 300, 1763-1767) copyright 2003.
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