PDBsum entry 1p3a Go to PDB code:  Pore analysis for: 1p3a calculated with MOLE 2.0 PDB id 1p3a Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.87 3.87 31.4 -1.86 -0.72 19.1 89 4 1 3 1 0 0 0  DA 7 I DT 8 I DC 9 I DG 18 I DT 92 I DA 279 J DG 280 J DG 281 J DT 282 J DG 284 J 2 3.63 3.97 34.1 -0.92 -0.74 9.6 97 2 2 4 1 0 0 0  DG 18 I DA 28 I DA 29 I DA 102 I DG 103 I DC 195 J DT 269 J 3 1.72 1.72 37.1 -0.90 -0.77 9.2 82 3 2 1 0 0 1 0  DT 21 I DA 27 I DA 28 I DA 29 I DA 30 I DG 103 I DT 266 J DG 267 J DG 268 J 4 2.99 3.41 38.9 -1.91 -0.55 22.5 79 4 2 0 1 1 0 0  DA 28 I DA 29 I DT 38 I DG 39 I DA 111 I DT 112 I DA 113 I DC 114 I DA 115 I DA 176 J DT 178 J DG 179 J DT 180 J DT 184 J DG 185 J DA 259 J 5 3.45 3.77 41.6 -1.68 -0.74 16.5 92 5 1 6 1 0 0 0  DC 9 I DC 10 I DG 18 I DT 92 I DC 195 J DA 279 J DG 280 J 6 3.67 3.67 45.8 -1.41 -0.77 16.1 85 6 1 3 0 0 0 0  DC 49 I DG 59 I DC 132 I DA 133 I DG 134 I DC 155 J DC 156 J DC 158 J DG 164 J DT 239 J DG 240 J DA 241 J 7 2.96 3.34 50.9 -2.91 -0.40 30.9 78 14 6 3 3 3 3 0  DA 28 I DA 29 I DG 185 J 8 1.27 2.21 59.5 -0.85 -0.70 8.9 94 1 0 3 1 0 1 0  DA 27 I DA 28 I DA 29 I DA 30 I DT 104 I DC 193 J DT 266 J DG 267 J DG 268 J DT 269 J DA 270 J 9 3.18 3.22 60.2 -2.06 -0.51 24.3 86 9 0 5 2 2 0 0  DG 39 I DC 49 I DA 110 I DA 111 I DT 112 I DA 113 I DC 114 I DA 115 I DG 164 J DA 176 J DT 178 J DG 179 J DT 180 J DA 248 J 10 3.02 3.45 62.9 -1.61 -0.65 19.1 86 7 2 6 2 2 0 0  DA 28 I DA 29 I DT 38 I DG 39 I DC 49 I DA 113 I DG 164 J DT 184 J DG 185 J DA 248 J DA 259 J 11 2.30 3.45 66.0 -2.20 -0.43 25.6 82 14 2 7 4 3 2 0  DC 49 I DG 164 J DA 248 J 12 3.47 3.67 76.4 -0.96 -0.58 12.5 91 6 1 7 2 1 0 0  DC 49 I DG 121 I DT 123 I DA 124 I DC 132 I DA 133 I DG 134 I DC 155 J DC 156 J DC 158 J DG 164 J DT 166 J DT 167 J DC 168 J 13 3.26 3.26 78.1 -1.04 -0.72 10.5 71 2 0 0 0 0 1 0  DG 59 I DC 60 I DG 63 I DT 64 I DT 65 I DC 132 I DA 133 I DG 134 I DG 135 I DT 136 I DT 152 J DA 153 J DT 154 J DC 155 J DC 156 J DC 158 J DA 231 J DT 232 J DG 233 J 14 2.43 3.44 84.3 -1.55 -0.35 16.6 87 11 3 14 3 6 2 0  DG 18 I DC 49 I DA 102 I DG 164 J DC 195 J DA 248 J DT 269 J 15 2.72 3.88 91.3 -2.99 -0.51 36.5 77 11 1 1 0 1 1 0  DG 39 I DG 40 I DA 42 I DA 43 I DA 110 I DA 111 I DT 112 I DA 113 I DC 114 I DA 115 I DA 175 J DA 176 J DT 178 J DG 179 J DT 180 J DA 248 J DG 249 J DT 250 J 16 3.25 3.25 106.7 -1.17 -0.75 12.6 79 3 1 1 0 0 1 0  DC 49 I DG 59 I DC 60 I DG 63 I DT 64 I DT 65 I DG 134 I DG 135 I DT 152 J DA 153 J DT 154 J DG 164 J DA 231 J DT 232 J DG 233 J DT 239 J DG 240 J DA 241 J 17 2.36 3.50 111.0 -2.38 -0.37 31.3 80 21 5 3 4 1 4 0  DG 39 I DA 110 I DA 111 I DT 112 I DA 113 I DC 114 I DA 115 I DA 176 J DT 178 J DG 179 J DT 180 J Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.