PDBsum entry 1p3a Go to PDB code:  Tunnel analysis for: 1p3a calculated with MOLE 2.0 PDB id 1p3a Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.30 36.4 -0.67 0.01 16.9 77 7 1 1 7 1 1 0  DG 39 I 2 1.28 1.30 46.1 -0.66 -0.12 13.7 83 4 1 5 7 2 1 0  DC 49 I DG 164 J DA 248 J 3 1.28 1.30 46.3 -0.69 -0.23 14.9 77 6 2 1 7 1 1 0  DT 123 I DA 124 I DC 172 J DA 173 J DA 174 J DA 175 J DG 249 J DT 250 J 4 1.29 1.30 46.4 -0.71 -0.09 14.9 77 4 1 1 7 2 1 0  DT 48 I DC 49 I DT 123 I DA 124 I DG 125 I DA 248 J DG 249 J 5 1.29 1.30 53.3 -1.03 -0.14 17.2 79 8 1 2 8 2 1 0  DA 42 I DA 43 I DA 248 J 6 1.30 1.31 56.9 -2.05 -0.31 27.1 77 9 4 2 8 2 4 0   7 1.29 1.31 58.1 -1.89 -0.28 27.9 79 9 4 2 6 2 1 0   8 1.31 1.31 61.0 -0.83 -0.32 14.6 79 7 2 2 7 1 3 0  DT 120 I DG 121 I DG 122 I DA 173 J DA 174 J DA 175 J DA 176 J 9 1.30 1.32 77.4 -1.21 -0.11 17.2 83 8 3 8 10 5 3 0  DT 20 I DT 269 J Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.