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PDBsum entry 1o1a
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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 1o1a calculated with MOLE 2.0 PDB id
1o1a
Pores calculated on whole structure Pores calculated excluding ligands
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40 pores, coloured by radius 50 pores, coloured by radius 50 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.35 3.44 95.9 -0.78 -0.23 13.2 79 7 7 3 7 5 2 0  
2 1.50 1.65 130.8 -1.49 -0.30 21.4 83 16 14 5 16 5 1 0  
3 1.46 1.64 136.5 -1.24 -0.24 20.4 83 17 16 3 19 6 0 0  
4 1.40 3.45 141.7 -1.33 -0.33 17.1 82 11 11 7 12 6 1 0  
5 1.85 1.90 145.3 -1.77 -0.34 22.8 82 17 14 7 13 5 3 0  
6 1.95 1.94 156.2 -0.84 -0.23 20.2 77 8 10 4 12 7 1 0  MLY 272 D MLY 431 D MLY 598 D MLY 768 D
7 1.15 1.40 162.2 -0.76 -0.13 22.1 75 10 15 4 13 11 0 1  MLY 272 J MLY 431 J MLY 505 J MLY 598 J MLY 764 J
8 1.48 1.65 177.6 -1.34 -0.34 19.8 82 12 16 8 16 7 2 0  MLY 272 J MLY 431 J MLY 598 J MLY 600 J
9 1.01 3.14 180.6 -1.19 -0.27 19.3 83 18 20 5 21 7 0 0  
10 1.99 2.26 201.4 -1.39 -0.42 18.3 82 11 19 12 17 8 2 0  MLY 272 J MLY 431 J MLY 598 J MLY 600 J
11 1.53 1.61 234.6 -1.15 -0.35 22.3 80 10 17 3 13 6 1 0  MLY 84 D MLY 839 D
12 1.44 1.56 241.1 -1.50 -0.40 21.9 84 21 25 11 25 8 2 0  MLY 272 D MLY 431 D MLY 598 D MLY 600 D
13 1.38 1.51 255.7 -1.43 -0.33 20.7 84 26 28 9 30 9 0 0  
14 1.77 2.17 252.6 -1.44 -0.46 21.7 83 15 30 14 23 10 0 0  MLY 272 D MLY 431 D MLY 598 D MLY 600 D MLY 272 J
MLY 431 J MLY 598 J MLY 600 J
15 1.22 1.42 272.7 0.38 0.28 14.5 78 14 13 5 38 13 0 3  MLY 827 D MLY 833 D MLY 837 D MLY 505 J MLY 764 J
16 1.93 2.20 268.7 -1.53 -0.44 20.2 85 18 26 17 26 8 1 0  MLY 272 J MLY 431 J MLY 598 J MLY 600 J
17 1.72 1.66 265.0 -1.49 -0.44 20.4 84 20 28 15 26 9 2 0  MLY 272 D MLY 431 D MLY 598 D MLY 600 D
18 1.49 1.65 301.0 -1.28 -0.25 18.9 81 16 20 9 20 12 4 0  MLY 130 G MLY 600 G MLY 681 G
19 1.93 2.28 293.9 -1.24 -0.37 19.4 81 11 26 11 17 12 2 0  MLY 272 D MLY 431 D MLY 598 D MLY 600 D MLY 130 G
MLY 598 G MLY 600 G MLY 681 G
20 2.30 2.30 305.3 -1.23 -0.34 18.9 80 10 25 12 17 13 2 0  MLY 130 G MLY 598 G MLY 600 G MLY 681 G MLY 272 J
MLY 431 J MLY 598 J MLY 600 J
21 1.26 2.00 318.3 -1.43 -0.38 22.1 84 27 35 14 32 10 2 0  MLY 272 A MLY 431 A MLY 598 A MLY 600 A
22 1.80 1.81 332.3 -1.59 -0.46 21.3 86 27 35 20 36 9 1 0  MLY 272 D MLY 431 D MLY 598 D MLY 600 D
23 1.25 1.97 322.6 -1.44 -0.44 22.3 84 21 40 17 29 11 0 0  MLY 272 A MLY 431 A MLY 598 A MLY 600 A MLY 272 J
MLY 431 J MLY 598 J MLY 600 J
24 1.52 1.73 342.2 0.11 0.12 16.0 78 16 16 7 41 14 0 2  MLY 827 D MLY 833 D MLY 837 D MLY 272 J MLY 431 J
MLY 598 J
25 1.25 2.01 347.0 -1.43 -0.39 23.1 82 22 37 13 21 11 1 0  MLY 272 A MLY 431 A MLY 598 A MLY 600 A MLY 431 D
MLY 598 D MLY 600 D MLY 768 D
26 1.97 2.15 362.4 -1.12 -0.33 21.2 82 21 36 14 28 11 0 0  MLY 272 D MLY 431 D MLY 598 D MLY 600 D MLY 35 G
MLY 431 G MLY 598 G MLY 600 G
27 1.40 1.53 369.5 -1.16 -0.25 21.3 82 26 30 12 31 11 2 0  MLY 35 G MLY 431 G MLY 598 G MLY 600 G
28 1.81 2.06 373.8 -1.16 -0.32 21.4 82 20 35 15 28 12 0 0  MLY 35 G MLY 431 G MLY 598 G MLY 600 G MLY 272 J
MLY 431 J MLY 598 J MLY 600 J
29 1.57 1.67 473.8 -1.49 -0.38 22.1 85 42 48 19 46 13 1 0  MLY 431 D MLY 598 D MLY 600 D MLY 768 D
30 1.22 1.72 503.1 -1.52 -0.34 22.6 84 44 53 21 48 18 1 1  MLY 431 J MLY 505 J MLY 598 J MLY 600 J MLY 764 J
31 2.77 3.49 26.7 -1.28 -0.65 23.7 88 0 4 1 4 1 0 0  MLY 19 P MLY 30 P MLY 87 P
32 2.17 3.26 28.6 -2.09 -0.32 19.0 81 2 2 3 2 2 1 0  MLY 30 P MLY 84 P
33 1.72 1.89 29.5 2.27 0.75 4.8 77 3 1 1 8 2 0 0  
34 2.43 2.43 30.1 -2.06 -0.34 23.3 79 3 5 1 3 2 1 0  MLY 19 P MLY 84 P MLY 87 P
35 1.72 1.91 37.1 0.92 0.45 13.5 77 4 4 0 8 2 0 0  
36 1.94 2.82 38.2 -1.35 -0.25 24.8 80 4 7 2 6 2 0 0  MLY 19 P MLY 87 P MLY 505 P MLY 764 P
37 1.93 2.82 43.6 -1.36 -0.19 25.0 80 6 5 3 5 2 0 0  MLY 505 P MLY 764 P
38 1.94 2.83 48.5 -1.02 -0.09 19.1 77 4 6 3 5 4 1 0  MLY 30 P MLY 84 P MLY 505 P MLY 764 P
39 2.61 2.76 66.1 -0.95 -0.52 19.5 81 1 9 4 8 2 2 0  MLY 272 P MLY 415 P MLY 431 P MLY 598 P MLY 600 P
40 1.17 2.36 85.4 0.03 0.20 8.4 79 1 2 5 8 3 2 0  MLY 130 P MLY 190 P
41 2.42 3.06 86.8 -0.12 -0.16 15.9 74 0 8 4 7 7 0 0  MLY 236 P MLY 272 P MLY 431 P MLY 598 P MLY 681 P
42 2.56 3.09 106.2 -0.52 -0.35 16.1 83 1 9 3 7 3 2 0  MLY 415 P MLY 598 P MLY 600 P MLY 681 P
43 1.42 2.44 108.1 -0.64 -0.22 15.9 85 4 7 5 13 2 1 0  MLY 30 P MLY 782 P
44 1.24 1.46 162.8 -0.89 -0.20 21.7 78 10 16 5 12 9 2 1  MLY 415 P MLY 431 P MLY 505 P MLY 598 P MLY 600 P
MLY 764 P
45 2.25 3.06 166.4 -0.71 -0.19 20.4 77 8 12 5 13 7 1 0  MLY 272 P MLY 431 P MLY 598 P MLY 768 P
46 2.38 2.57 179.1 -0.96 -0.29 20.9 80 9 15 6 12 5 3 0  MLY 415 P MLY 431 P MLY 598 P MLY 600 P MLY 768 P
47 1.15 1.53 180.3 -1.17 -0.17 22.6 73 9 9 2 7 9 2 1  MLY 130 P MLY 236 P MLY 505 P MLY 681 P MLY 764 P
48 2.32 3.16 196.5 -1.29 -0.27 21.4 76 8 8 3 7 6 3 0  MLY 130 P MLY 681 P MLY 768 P
49 1.30 2.76 33.0 1.74 0.71 9.6 72 3 1 0 7 2 0 0  
50 1.73 1.91 74.2 0.40 0.06 15.1 79 3 7 1 8 2 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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