PDBsum entry 1nyu Go to PDB code:  Pore analysis for: 1nyu calculated with MOLE 2.0 PDB id 1nyu Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.78 2.77 27.9 -1.93 -0.89 22.4 85 0 6 3 1 0 0 0   2 1.54 1.54 28.3 -2.13 -0.50 22.4 82 4 4 3 3 0 1 0   3 2.78 2.77 31.9 -2.14 -0.91 22.1 85 0 8 5 1 0 0 0   4 2.79 2.79 37.8 -1.63 -0.62 19.4 80 1 7 3 2 2 0 0   5 2.19 2.26 64.2 -1.24 -0.21 16.4 77 4 7 5 2 5 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.