PDBsum entry 1nfd

Pore analysis for: 1nfd calculated with

MOLE 2.0

PDB id

1nfd

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.79

4.20

47.2

-1.26

-0.51

15.4

78

4

2

4

6

0

1

0

2

1.86

3.38

70.4

-1.99

-0.51

21.7

85

8

3

7

4

0

2

0

NAG 251 B

3

2.56

2.79

85.3

-2.21

-0.55

27.6

86

9

9

8

3

1

2

0

NAG 251 B

4

1.23

1.44

94.1

-1.57

-0.32

17.1

80

5

3

4

4

0

1

0

NAG 216 A

5

1.58

2.01

106.6

-1.55

-0.30

23.9

81

9

6

7

8

1

3

0

6

1.64

2.17

137.9

-1.72

-0.44

23.6

84

11

9

9

6

1

5

0

NAG 251 B

7

2.24

2.25

67.9

-1.64

-0.73

12.0

89

3

1

7

1

0

3

0

8

2.25

2.24

70.5

-1.64

-0.56

12.2

87

3

1

6

2

1

4

0

9

1.25

1.25

66.2

-1.00

-0.35

16.4

78

3

4

3

3

2

4

0

10

1.27

2.06

84.5

-1.01

-0.53

10.2

86

3

4

4

3

1

4

0

11

2.08

2.08

76.7

-1.81

-0.47

22.7

85

7

5

6

2

0

5

0

NAG 248 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.