PDBsum entry 1nfd Go to PDB code:  Tunnel analysis for: 1nfd calculated with MOLE 2.0 PDB id 1nfd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.47 22.9 1.13 0.26 1.6 70 0 0 1 4 1 2 3   2 1.23 1.46 29.2 0.72 0.53 2.8 56 1 0 0 5 2 3 3   3 1.23 1.46 30.5 0.75 0.05 3.6 78 1 0 2 5 1 2 2   4 1.23 1.46 31.2 0.43 0.00 3.6 77 0 1 2 5 1 4 2   5 1.23 1.46 34.9 0.47 0.36 3.9 64 1 2 0 6 2 3 3   6 1.23 1.47 38.2 0.11 -0.17 4.9 76 1 1 1 4 1 3 2   7 1.22 2.74 50.1 0.12 0.15 7.6 68 2 1 2 8 4 3 3   8 1.32 2.83 20.4 -1.73 -0.20 21.8 70 2 2 3 3 4 0 0   9 1.46 1.87 17.2 -0.51 -0.13 13.7 87 3 1 2 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.