PDBsum entry 1nez Go to PDB code:  Tunnel analysis for: 1nez calculated with MOLE 2.0 PDB id 1nez Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.25 34.1 -1.33 -0.66 12.2 90 2 3 5 4 0 1 0   2 1.25 1.25 39.6 -1.08 -0.40 8.8 86 2 1 7 3 4 2 0   3 1.25 1.25 41.6 -1.75 -0.56 17.5 91 5 2 6 3 1 1 0   4 1.25 1.26 54.8 -1.70 -0.46 20.0 87 7 3 6 6 3 1 0   5 1.16 2.31 21.0 -1.08 0.05 11.0 73 2 1 2 2 2 2 0   6 1.16 1.99 20.8 0.43 0.74 9.2 66 0 1 1 4 7 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.