PDBsum entry 1nd0 Go to PDB code:  Tunnel analysis for: 1nd0 calculated with MOLE 2.0 PDB id 1nd0 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.15 27.7 -0.61 -0.35 14.1 89 3 1 3 2 1 0 0   2 1.13 1.13 30.0 -1.04 -0.36 17.0 82 4 1 3 2 1 2 0   3 1.37 1.47 18.9 -1.85 -0.43 20.2 73 4 1 1 1 1 0 0   4 1.38 1.48 20.8 -1.60 -0.37 21.4 73 4 1 1 1 1 0 0   5 1.34 1.43 20.2 -1.51 -0.32 19.7 73 4 1 1 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.