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PDBsum entry 1mgo

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1mgo calculated with MOLE 2.0 PDB id
1mgo
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.57 1.79 32.3 1.33 0.32 5.3 82 1 1 3 11 1 0 1  PFB 601 B
2 1.18 1.18 34.8 0.01 -0.23 8.0 75 1 1 1 6 1 1 1  
3 1.57 1.79 40.7 0.56 0.03 8.9 87 3 1 1 9 1 0 1  NAD 377 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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