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PDBsum entry 1m18

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1m18 calculated with MOLE 2.0 PDB id
1m18
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.15 1.96 42.1 -2.05 -0.14 30.4 68 9 2 0 5 3 1 0  DT 38 I DA 175 J
2 1.17 2.02 42.5 -2.56 -0.43 31.4 70 7 3 1 7 2 3 0  
3 1.15 1.99 43.0 -2.49 -0.40 29.5 72 9 2 1 6 2 1 0  
4 1.17 1.67 46.8 -2.48 -0.39 29.2 75 9 3 2 6 2 0 0  
5 1.17 2.22 47.3 -2.14 -0.45 25.8 73 6 2 2 6 2 0 0  
6 1.17 2.33 56.7 -1.81 -0.30 22.1 75 6 4 4 5 4 1 0  DT 48 I DT 123 I DA 124 I
7 1.15 2.08 57.3 -2.50 -0.25 29.1 69 12 3 1 4 5 1 0  DA 27 I DA 28 I DT 104 I DT 105 I

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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