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PDBsum entry 1m18
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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1m18 calculated with MOLE 2.0 PDB id
1m18
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 27 pores, coloured by radius 27 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.40 3.55 26.9 0.60 0.00 5.5 93 2 0 3 3 1 0 0  DT 48 I DG 121 I DT 123 I DA 124 I DT 166 J DT
167 J DC 168 J DT 169 J
2 1.69 1.69 35.3 -0.91 -0.75 9.4 83 1 0 0 0 0 0 0  DG 58 I DG 59 I DC 60 I DA 61 I DG 134 I DG 135 I
DC 162 J DA 163 J DT 236 J DT 237 J DT 238 J DT
239 J DG 240 J
3 2.54 2.62 36.7 -1.87 -0.43 23.2 86 5 2 5 1 1 0 0  DT 38 I DT 48 I DA 174 J DA 175 J
4 1.70 2.19 37.7 -1.45 -0.74 16.5 84 3 1 1 0 0 0 0  DG 58 I DG 59 I DC 60 I DA 61 I DT 62 I DG 134 I
DG 164 J DT 236 J DT 237 J DT 238 J DT 239 J
5 1.72 1.73 48.5 -1.34 -0.55 16.4 90 4 0 3 1 0 0 0  DC 9 I DC 10 I DA 17 I DG 18 I DA 19 I DT 20 I DT
21 I DT 276 J DG 277 J DA 279 J DG 280 J DT 288 J
DT 289 J MN 601 J
6 1.97 1.97 48.8 -2.80 -0.64 33.5 77 5 1 1 0 0 1 0  DA 7 I DT 8 I DC 9 I DC 10 I DA 83 I DC 84 I DG
205 J DC 206 J DA 207 J DT 208 J DG 209 J DT 210
J DA 279 J DG 280 J DG 281 J DT 282 J DT 288 J DT
289 J MN 601 J
7 1.28 1.47 49.1 -1.46 -0.71 16.3 89 5 2 0 0 0 3 0  DT 130 I DG 131 I DC 132 I DA 133 I DG 134 I DG
135 I DG 161 J DC 162 J DA 163 J DG 164 J DA 165
J DT 166 J DG 240 J
8 2.02 2.06 49.5 -1.88 -0.71 21.9 74 3 1 0 0 0 1 0  DG 58 I DG 59 I DC 60 I DA 61 I DG 63 I DT 64 I
DG 134 I DG 135 I DA 153 J DC 162 J DA 163 J DG
227 J DA 228 J DA 229 J DC 230 J DA 231 J DT 239
J DG 240 J
9 2.04 2.08 50.5 -2.32 -0.71 27.9 74 4 2 0 0 0 1 0  DT 48 I DG 58 I DG 59 I DC 60 I DA 61 I DG 63 I
DT 64 I DG 134 I DG 135 I DA 153 J DG 164 J DG
227 J DA 228 J DA 229 J DC 230 J DA 231 J DT 239 J
10 2.53 2.53 53.2 -1.21 -0.41 17.0 90 7 1 5 4 1 0 0  DT 20 I DT 21 I DC 22 I DT 23 I DA 28 I DG 185 J
DA 261 J DT 269 J DA 270 J
11 2.46 3.40 54.2 -2.53 -0.34 31.0 77 13 3 2 3 1 1 0  DT 38 I DC 114 I DA 174 J DA 175 J
12 1.93 1.94 57.3 -1.76 -0.43 23.7 75 6 0 0 3 0 1 0  DG 71 I DA 72 I DA 73 I DT 74 I DC 79 I DG 216 J
DA 218 J DA 219 J DT 220 J DT 288 J DT 289 J DG
290 J MN 603 J
13 3.10 3.62 58.6 -1.03 -0.49 14.1 89 5 0 6 4 1 0 0  DG 18 I DA 19 I DT 20 I DT 21 I DC 22 I DT 23 I
DT 90 I DT 91 I DT 92 I DT 93 I DC 195 J DT 198 J
DC 199 J DA 200 J DG 267 J DT 269 J DA 270 J DG
271 J
14 3.16 3.17 59.1 -1.47 -0.58 16.6 84 6 1 5 1 0 0 0  DC 9 I DC 10 I DG 18 I DT 90 I DT 91 I DT 92 I DT
93 I DT 198 J DC 199 J DA 200 J DA 279 J DG 280 J
DT 288 J DT 289 J MN 601 J
15 1.73 1.74 61.7 -1.18 -0.49 16.2 82 5 0 3 2 0 0 0  DA 17 I DG 18 I DA 19 I DT 20 I DT 21 I DT 90 I
DT 91 I DT 92 I DT 93 I DT 198 J DC 199 J DA 200
J DT 276 J DG 277 J DA 279 J DG 280 J
16 1.73 1.75 70.5 -1.25 -0.53 16.6 94 4 0 5 4 1 0 0  DA 17 I DG 18 I DA 19 I DT 20 I DT 21 I DC 22 I
DT 23 I DC 195 J DG 267 J DT 269 J DA 270 J DG
271 J DT 276 J DG 277 J DA 279 J DG 280 J
17 2.77 2.77 76.3 -1.99 -0.35 22.8 84 12 2 8 5 3 1 0  DT 20 I DT 21 I DC 22 I DT 23 I DT 269 J DA 270 J
18 2.54 2.54 77.6 -1.25 -0.50 16.3 92 6 1 8 4 1 0 0  DC 9 I DC 10 I DG 18 I DA 19 I DT 20 I DT 21 I DC
22 I DT 23 I DC 195 J DT 269 J DA 270 J DG 271 J
DA 279 J DG 280 J DT 288 J DT 289 J MN 601 J
19 3.14 3.32 82.1 -1.43 -0.44 18.3 82 10 1 6 3 2 0 0  DG 18 I DA 28 I DT 90 I DT 91 I DT 92 I DT 93 I D
A 102 I DG 185 J DT 198 J DC 199 J DA 200 J DA
261 J
20 2.56 3.39 88.6 -1.55 -0.25 17.2 88 9 5 13 5 5 2 0  DT 20 I DT 21 I DC 22 I DT 23 I DT 48 I DT 269 J
DA 270 J
21 1.74 1.75 94.0 -1.52 -0.46 19.5 86 9 1 5 3 2 0 0  DA 17 I DG 18 I DA 19 I DT 20 I DT 21 I DA 28 I D
A 102 I DG 185 J DA 261 J DT 276 J DG 277 J DA
279 J DG 280 J
22 1.77 1.96 96.7 -1.36 -0.53 16.2 81 11 2 3 5 0 3 0  DT 48 I DC 69 I DA 133 I DG 134 I DT 142 I DT 143
I DT 154 J DC 155 J DC 156 J DG 164 J DA 218 J DA
219 J DT 239 J
23 2.87 3.18 106.3 -2.06 -0.38 23.6 80 16 2 9 4 4 1 0  DG 18 I DT 90 I DT 91 I DT 92 I DT 93 I DA 102 I
DT 198 J DC 199 J DA 200 J
24 1.75 1.99 105.5 -1.29 -0.53 16.5 81 9 1 3 5 0 3 0  DG 58 I DG 59 I DC 69 I DA 133 I DG 134 I DG 135
I DT 142 I DT 143 I MN 602 I DT 154 J DC 155 J DC
156 J DC 162 J DA 163 J DA 218 J DA 219 J DT 239
J DG 240 J
25 3.11 3.60 114.4 -1.69 -0.51 19.4 82 12 2 8 3 2 2 0  DC 9 I DC 10 I DG 18 I DA 28 I DA 102 I DG 185 J
DA 261 J DA 279 J DG 280 J DT 288 J DT 289 J MN
601 J
26 1.75 1.99 114.3 -1.33 -0.56 16.9 81 10 2 3 5 0 3 0  DG 58 I DG 59 I DC 60 I DA 61 I DT 62 I DC 69 I D
A 133 I DG 134 I DT 142 I DT 143 I MN 602 I DT
154 J DC 155 J DC 156 J DA 218 J DA 219 J DT 236
J DT 237 J DT 238 J DT 239 J
27 2.50 3.65 118.7 -1.65 -0.31 18.4 84 13 5 14 4 6 2 0  DG 18 I DT 48 I DT 90 I DT 91 I DT 92 I DT 93 I D
A 102 I DT 198 J DC 199 J DA 200 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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