PDBsum entry 1ldj Go to PDB code:  Tunnel analysis for: 1ldj calculated with MOLE 2.0 PDB id 1ldj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.35 25.0 -1.38 -0.51 16.1 74 1 2 3 3 2 0 0   2 1.17 1.37 29.7 -0.75 -0.12 16.3 65 2 2 1 4 4 0 0   3 1.40 1.59 32.4 -1.82 -0.34 16.8 74 4 1 3 3 2 1 0   4 1.31 2.21 39.7 -2.02 -0.47 16.2 78 4 1 4 4 2 1 0   5 1.18 1.86 28.8 1.60 0.49 3.6 83 1 0 0 8 2 0 0   6 1.20 1.85 33.5 0.77 0.20 9.0 80 2 2 0 9 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.