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PDBsum entry 1kb2

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1kb2 calculated with MOLE 2.0 PDB id
1kb2
Pores calculated on whole structure Pores calculated excluding ligands

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1 pore, coloured by radius 1 pore, coloured by radius 1 pore, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.23 2.38 31.3 -1.38 -0.70 15.6 79 3 0 0 0 0 0 0  DG 411 C DA 412 C DG 413 C DT 415 C DT 416 C DT
425 D DC 426 D DG 427 D DT 428 D DG 429 D DA 430 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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