PDBsum entry 1kb2 Go to PDB code:  Tunnel analysis for: 1kb2 calculated with MOLE 2.0 PDB id 1kb2 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.13 20.7 -1.50 -0.70 14.8 72 1 0 1 0 1 0 0  DG 411 C DA 412 C DG 427 D DT 428 D DG 429 D DA 430 D 2 1.13 1.14 30.1 -1.18 -0.67 11.8 72 2 0 1 0 1 0 0  DA 412 C DG 413 C DT 425 D DC 426 D DG 427 D DT 428 D 3 1.13 1.14 30.2 -1.48 -0.59 15.9 72 3 2 1 2 2 0 0  DA 412 C DG 413 C DG 427 D DT 428 D 4 1.13 1.13 31.6 -1.29 -0.44 15.2 75 4 1 1 3 2 0 0  DA 412 C DG 413 C DG 427 D DT 428 D 5 1.13 1.13 35.9 -1.09 -0.60 11.4 74 3 3 1 1 1 1 0  DA 412 C DG 413 C DG 427 D DT 428 D 6 1.32 1.32 15.2 -1.62 -0.48 22.1 82 1 0 0 1 0 0 0  DG 404 C DG 434 D DT 435 D DG 436 D 7 1.72 1.76 20.4 -1.39 -0.47 20.4 73 1 0 0 2 0 0 0  DG 404 C DG 434 D DT 435 D DG 436 D 8 1.21 1.21 23.3 -1.03 -0.44 17.3 59 1 0 0 1 1 0 0  DG 404 C DG 405 C DT 406 C DC 433 D DG 434 D DT 435 D DG 436 D 9 1.20 1.20 24.6 -1.52 -0.59 19.3 82 1 0 0 1 0 0 0  DG 404 C DG 405 C DT 406 C DC 433 D DG 434 D DT 435 D DG 436 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.