PDBsum entry 1k8c Go to PDB code:  Tunnel analysis for: 1k8c calculated with MOLE 2.0 PDB id 1k8c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 2.54 25.6 1.10 0.08 8.1 80 2 1 1 5 0 0 0   2 1.93 1.93 18.0 -0.86 -0.59 9.3 90 2 0 3 0 1 0 0  NAP 1350 A 3 1.84 4.50 19.8 -0.12 -0.36 5.3 83 1 0 3 0 2 0 0  NAP 1350 A 4 1.15 1.28 21.3 0.06 -0.19 4.9 78 2 1 1 6 0 2 0   5 1.14 1.28 26.1 -0.13 -0.24 6.8 78 2 1 1 6 0 2 0   6 1.17 1.52 27.4 -0.82 -0.14 11.7 76 2 2 3 3 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.