PDBsum entry 1jof Go to PDB code:  Pore analysis for: 1jof calculated with MOLE 2.0 PDB id 1jof Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   31 pores, coloured by radius 33 pores, coloured by radius 33 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.24 36.4 -1.51 -0.42 11.8 69 2 3 1 1 3 2 0   2 2.70 3.27 52.2 -3.14 -0.70 41.8 80 12 8 3 1 1 0 0   3 1.37 1.38 56.0 -1.00 -0.30 15.9 72 6 6 2 3 4 2 0   4 1.20 1.21 62.1 -0.50 -0.15 13.4 67 5 5 3 5 5 3 0  BME 466 D 5 1.37 1.37 70.9 -1.01 -0.32 16.3 77 8 6 5 5 5 2 0   6 1.14 1.96 90.2 -0.90 0.11 16.0 73 10 3 4 12 11 2 0  MSE 359 A MSE 359 E 7 1.55 1.58 94.2 -1.71 -0.39 24.0 75 12 11 5 5 5 5 0  BME 766 G 8 1.59 1.85 101.4 -1.79 -0.63 18.9 84 8 8 9 2 2 1 0   9 1.88 2.15 106.1 -1.80 -0.66 21.3 84 7 9 6 3 0 4 0   10 3.02 3.10 108.9 -1.76 -0.29 23.8 78 15 9 6 4 6 9 0  BME 367 A SO4 461 D BME 566 E SO4 861 H 11 1.61 1.92 114.8 -1.58 -0.36 21.2 78 14 10 6 4 6 6 0  BME 367 A SO4 461 D 12 1.31 2.00 118.5 -1.10 -0.21 13.5 79 11 5 6 8 6 5 0  MSE 200 E MSE 359 E 13 2.75 3.23 128.7 -2.33 -0.45 29.2 74 18 15 2 4 5 5 0  BME 368 A 14 1.31 2.01 131.1 -1.69 -0.03 23.5 74 20 11 4 7 11 3 0  BME 368 A MSE 359 E 15 1.35 1.34 129.8 -0.77 -0.24 11.5 76 10 8 6 7 8 8 0  BME 367 A SO4 461 D 16 1.33 1.89 132.5 -1.71 -0.06 23.8 73 18 12 3 7 12 3 0  MSE 359 A BME 368 A 17 1.31 2.02 131.5 -2.23 -0.18 30.7 73 22 16 2 6 10 2 0  BME 368 A MSE 359 E 18 3.21 3.26 132.4 -2.80 -0.55 35.7 74 21 20 0 3 4 4 0  BME 368 A 19 1.41 1.93 136.2 -2.24 -0.16 30.7 73 21 17 1 6 11 2 0  MSE 359 A BME 368 A 20 1.33 1.32 141.7 -0.94 -0.21 13.8 76 12 8 8 10 8 11 0  BME 367 A SO4 461 D BME 566 E SO4 861 H 21 1.58 1.63 142.7 -1.39 -0.41 18.4 76 11 14 7 6 7 6 0  BME 766 G 22 1.55 1.87 144.7 -1.75 -0.47 21.7 76 12 15 5 7 4 6 0   23 1.39 1.98 151.8 -1.14 -0.12 17.9 72 15 10 6 9 11 6 0  MSE 359 F BME 699 F BME 1866 H 24 1.39 1.84 155.4 -1.39 -0.08 20.3 71 17 14 3 9 15 4 0  MSE 359 A BME 766 G 25 1.23 1.98 155.4 -1.36 -0.06 20.1 71 19 13 4 9 15 4 0  MSE 359 E BME 766 G 26 1.42 1.58 156.5 -1.49 -0.34 19.7 77 16 14 9 8 10 10 0  BME 367 A SO4 461 D BME 566 E BME 766 G SO4 861 H 27 1.28 2.04 168.5 -1.12 -0.02 18.5 70 19 11 5 11 16 5 0  BME 368 A BME 367 C MSE 359 E 28 1.34 1.96 180.7 -1.52 -0.21 20.7 78 18 12 9 11 10 9 0  BME 367 A SO4 461 D BME 566 E MSE 359 G SO4 861 H 29 1.36 1.99 192.6 -2.26 -0.34 30.6 73 24 20 2 9 8 5 0  MSE 359 F BME 699 F 30 1.16 1.94 239.4 -1.77 -0.16 24.5 72 24 20 7 13 15 7 0  MSE 359 E PIN 9078 H 31 1.00 1.00 94.5 -1.08 -0.19 11.1 81 8 2 6 5 4 5 0  MSE 45 C MSE 200 C MSE 359 C 32 1.20 1.97 102.1 -0.74 -0.10 13.2 79 8 5 2 8 5 3 0  MSE 200 B MSE 359 B MSE 228 C 33 1.30 1.45 108.4 -1.00 -0.39 12.1 84 5 5 2 3 2 3 0  MSE 200 B MSE 228 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.