PDBsum entry 1jof Go to PDB code:  Tunnel analysis for: 1jof calculated with MOLE 2.0 PDB id 1jof Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   27 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.30 162.1 -0.30 0.03 10.5 73 12 6 7 13 16 10 1  BME 367 A SO4 461 D BME 566 E MSE 269 G MSE 324 G SO4 861 H 2 1.18 1.10 165.3 -1.08 -0.11 20.2 76 17 14 9 12 16 9 0  MSE 269 A MSE 324 A BME 367 A SO4 461 D BME 566 E SO4 861 H 3 1.20 1.23 171.7 -0.89 -0.11 16.9 74 15 12 7 13 13 11 1  MSE 269 A MSE 324 A BME 367 A BME 367 C SO4 461 D BME 566 E SO4 861 H 4 1.12 1.37 210.4 -0.91 -0.09 17.9 74 21 14 10 13 20 10 1  BME 367 A MSE 269 B MSE 324 B SO4 461 D BME 566 E BME 766 G SO4 861 H 5 1.30 1.30 19.2 -2.22 -0.54 29.0 81 3 1 0 2 0 1 0  MSE 59 E 6 1.33 1.33 18.5 -2.20 -0.55 26.7 81 3 1 0 2 0 1 0  MSE 59 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.