spacer
spacer

PDBsum entry 1jk1

Go to PDB code: 
Top Page protein dna_rna metals pores links
Pore analysis for: 1jk1 calculated with MOLE 2.0 PDB id
1jk1
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
1 pore, coloured by radius 1 pore, coloured by radius 1 pore, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.13 1.31 29.2 -0.94 -0.27 16.4 86 3 0 2 1 1 1 0  DT 5 B DG 6 B DC 52 C DC 53 C DC 61 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer