PDBsum entry 1j2q Go to PDB code:  Pore analysis for: 1j2q calculated with MOLE 2.0 PDB id 1j2q Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   27 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.87 2.27 25.2 -0.59 -0.33 13.9 87 3 1 1 4 1 0 0  CIB 1001 H 2 1.33 1.39 49.6 -0.24 -0.20 12.5 87 4 4 4 7 2 0 0  CIB 1001 H 3 1.17 1.33 76.4 -0.03 -0.14 8.6 88 2 5 7 11 3 0 0  CIB 1001 H 4 1.57 1.60 77.3 -1.65 -0.50 22.1 77 5 6 2 7 3 1 0   5 1.44 1.58 82.0 -2.66 -0.60 31.3 81 12 10 3 2 1 1 0   6 1.98 4.20 86.5 -2.85 -0.48 28.6 78 8 8 4 2 3 2 0   7 1.25 1.28 95.0 0.03 -0.07 10.5 85 2 5 5 9 3 0 0  CIB 1301 K 8 1.14 2.11 107.7 -0.22 -0.15 10.4 85 5 7 7 14 5 1 0  CIB 1401 L 9 1.39 1.44 111.6 0.18 -0.12 5.6 88 2 3 8 14 2 1 0  CIB 1001 H CIB 1601 N 10 1.74 1.89 110.9 -1.73 -0.48 25.4 79 15 10 3 8 3 1 0  CIB 1601 N 11 1.50 1.61 112.0 -2.11 -0.58 27.2 79 16 10 4 6 3 1 0   12 1.81 1.91 113.7 -2.27 -0.59 30.4 78 16 13 2 4 2 1 0   13 1.27 1.32 120.3 0.15 -0.08 7.3 87 2 6 10 15 3 1 0  CIB 1001 H CIB 1601 N 14 1.65 1.74 123.0 -1.92 -0.48 25.1 79 16 8 4 8 4 2 0  CIB 1401 L 15 1.41 1.42 123.6 0.54 0.07 6.7 86 2 5 8 12 3 2 0  CIB 1201 J CIB 1301 K 16 1.61 1.61 124.7 -2.39 -0.63 29.7 77 16 13 3 7 4 1 0   17 1.69 1.97 126.6 -1.99 -0.53 24.8 77 16 9 4 7 4 2 0   18 1.61 1.65 127.8 -2.37 -0.60 30.5 77 16 13 3 4 3 1 0   19 2.00 2.04 139.9 0.67 0.24 6.6 79 2 2 6 9 4 2 0  CIB 1201 J CIB 1301 K 20 1.86 1.96 147.0 -2.15 -0.58 29.9 76 21 15 2 7 5 1 0   21 1.85 1.86 150.4 -1.18 -0.26 18.1 80 9 8 6 9 6 1 0  CIB 1201 J 22 1.68 1.97 152.8 -2.57 -0.63 27.8 80 18 15 6 3 2 3 0   23 1.48 1.49 152.8 -2.51 -0.59 27.4 79 18 14 6 5 3 3 0   24 1.44 1.60 163.7 -0.89 -0.25 16.1 83 9 11 10 14 5 3 0  CIB 1201 J CIB 1301 K 25 1.93 2.04 173.2 -2.70 -0.68 32.4 79 23 21 4 3 3 2 0   26 1.27 1.36 177.5 -0.13 -0.19 10.0 85 5 8 11 19 2 4 0  CIB 1001 H CIB 1501 M CIB 1601 N 27 1.21 1.66 198.9 0.48 0.04 6.9 84 3 5 11 20 5 5 0  CIB 1201 J CIB 1301 K CIB 1401 L 28 1.28 1.65 207.5 -2.14 -0.51 26.4 78 23 16 6 8 6 3 0   29 1.33 1.39 226.4 -0.81 -0.30 16.3 82 16 15 12 20 4 5 0  CIB 1001 H CIB 1501 M CIB 1601 N 30 1.47 1.53 341.7 -2.60 -0.62 30.4 78 35 34 9 5 8 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.