PDBsum entry 1j2q Go to PDB code:  Tunnel analysis for: 1j2q calculated with MOLE 2.0 PDB id 1j2q Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.20 32.8 1.68 0.41 3.6 84 1 0 0 13 1 0 0   2 1.17 1.21 33.6 0.49 0.38 16.4 83 5 3 0 10 1 0 0   3 1.17 1.22 37.9 0.35 0.18 12.4 82 4 3 0 12 1 0 0   4 1.18 1.26 50.1 1.51 0.47 4.8 83 3 1 1 17 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.