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PDBsum entry 1gpm
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Pore analysis for: 1gpm calculated with  MOLE 2.0
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PDB id
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1gpm
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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11 pores,
coloured by radius |
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16 pores,
coloured by radius
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16 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.04 |
2.17 |
47.6 |
-0.25 |
-0.29 |
11.2 |
85 |
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2 |
3 |
2 |
6 |
1 |
0 |
0 |
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2 |
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1.38 |
1.37 |
48.2 |
-2.58 |
-0.30 |
28.3 |
72 |
5 |
5 |
1 |
0 |
4 |
2 |
0 |
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3 |
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2.13 |
2.59 |
51.0 |
-2.25 |
-0.25 |
25.7 |
75 |
5 |
4 |
3 |
1 |
5 |
0 |
0 |
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4 |
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2.29 |
2.58 |
52.7 |
-1.83 |
-0.31 |
23.7 |
76 |
6 |
4 |
2 |
1 |
2 |
0 |
0 |
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5 |
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2.17 |
2.36 |
59.0 |
-2.02 |
-0.41 |
24.6 |
79 |
5 |
7 |
1 |
3 |
2 |
1 |
0 |
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6 |
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2.73 |
3.85 |
60.5 |
-1.53 |
-0.38 |
22.4 |
80 |
7 |
6 |
2 |
3 |
2 |
1 |
0 |
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7 |
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2.67 |
2.89 |
60.8 |
-2.35 |
-0.37 |
29.2 |
80 |
7 |
7 |
1 |
2 |
2 |
1 |
0 |
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8 |
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2.95 |
3.20 |
64.1 |
-1.40 |
-0.43 |
21.0 |
81 |
6 |
6 |
2 |
5 |
2 |
1 |
0 |
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9 |
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1.41 |
1.40 |
76.9 |
-1.98 |
-0.36 |
24.5 |
75 |
8 |
4 |
2 |
1 |
4 |
2 |
0 |
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10 |
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1.20 |
1.70 |
25.8 |
-1.39 |
-0.23 |
21.2 |
76 |
4 |
3 |
3 |
1 |
2 |
2 |
0 |
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11 |
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2.99 |
3.97 |
40.7 |
-1.75 |
-0.38 |
21.3 |
77 |
3 |
2 |
4 |
2 |
3 |
2 |
0 |
POP 526 C AMP 527 C MG 530 C
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12 |
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1.80 |
1.80 |
47.5 |
-1.34 |
-0.32 |
17.6 |
75 |
3 |
2 |
3 |
3 |
4 |
2 |
0 |
POP 526 C AMP 527 C MG 530 C
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13 |
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1.90 |
3.09 |
62.2 |
-2.34 |
-0.39 |
27.6 |
77 |
3 |
8 |
1 |
3 |
3 |
1 |
0 |
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14 |
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2.62 |
2.63 |
25.4 |
-1.21 |
-0.15 |
16.1 |
81 |
4 |
2 |
3 |
1 |
1 |
2 |
0 |
AMP 527 D PO4 528 D
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15 |
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2.34 |
3.76 |
36.2 |
-2.34 |
-0.28 |
25.4 |
81 |
4 |
1 |
2 |
0 |
3 |
0 |
0 |
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16 |
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2.33 |
3.79 |
44.6 |
-1.45 |
-0.17 |
16.7 |
80 |
4 |
3 |
2 |
1 |
3 |
2 |
0 |
AMP 527 D PO4 528 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program