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PDBsum entry 1gpm
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Tunnel analysis for: 1gpm calculated with  MOLE 2.0
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PDB id
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1gpm
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.15 |
1.89 |
27.2 |
-1.24 |
-0.03 |
19.6 |
86 |
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4 |
1 |
3 |
6 |
1 |
0 |
0 |
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2 |
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1.51 |
1.55 |
16.9 |
-2.09 |
-0.44 |
18.0 |
74 |
1 |
1 |
2 |
1 |
2 |
1 |
0 |
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3 |
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2.19 |
2.49 |
16.7 |
-0.99 |
-0.55 |
7.0 |
77 |
1 |
1 |
3 |
1 |
1 |
1 |
1 |
CIT 529 B
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4 |
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1.17 |
1.41 |
21.4 |
-0.79 |
-0.22 |
23.8 |
65 |
2 |
3 |
0 |
3 |
1 |
0 |
1 |
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5 |
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1.43 |
1.96 |
18.1 |
-1.80 |
-0.49 |
21.5 |
82 |
2 |
1 |
3 |
0 |
0 |
1 |
1 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program