PDBsum entry 1dyk Go to PDB code:  Tunnel analysis for: 1dyk calculated with MOLE 2.0 PDB id 1dyk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 0.94 0.94 15.5 -1.88 -0.76 19.9 82 1 5 4 1 1 2 1   2 0.94 0.94 22.3 -1.51 -0.82 15.6 90 1 6 6 3 1 1 1   3 1.34 1.97 20.5 -1.00 -0.24 9.3 78 1 1 3 3 1 5 3   4 1.38 1.38 17.1 -0.02 0.04 12.2 79 5 0 0 3 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.