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PDBsum entry 1dgu

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Blood clotting PDB id
1dgu
Contents
Protein chain
183 a.a. *
* Residue conservation analysis

References listed in PDB file
Key reference
Title Structures of the platelet calcium- And integrin-Binding protein and the alphaiib-Integrin cytoplasmic domain suggest a mechanism for calcium-Regulated recognition; homology modelling and nmr studies.
Authors P.M.Hwang, H.J.Vogel.
Ref. J Mol Recognit, 2000, 13, 83-92.
PubMed id 10822252
Abstract
Calcium- and integrin-binding protein (CIB) binds to the 20-residue alphaIIb cytoplasmic domain of platelet alphaIIbbeta3 integrin. Amino acid sequence similarities with calmodulin (CaM) and calcineurin B (CnB) allowed the construction of homology-based models of calcium-saturated CIB as well as apo-CIB. In addition, the solution structure of the alphaIIb cytoplasmic domain in 45% aqueous trifluoroethanol was solved by conventional two-dimensional NMR methods. The models indicate that the N-terminal domain of CIB possesses a number of positively charged residues in its binding site that could interact with the acidic carboxy-terminal LEEDDEEGE sequence of alphaIIb. The C-terminal domain of CIB seems well-suited to bind the sequence WKVGFFKR, which forms a well-structured alpha helix; this is analogous to calmodulin and calcineurin B, which also bind alpha helices. Similarities between the C-terminal domains of CIB and calmodulin suggest that binding of CIB to the cytoplasmic domain of alphaIIb may be affected by fluctuations in the intracellular calcium concentration.
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